RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 STRA6Q9BX79 667 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 MRPL4Q9BYD3 311 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CCDC113Q9H0I3 377 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 GBP3Q9H0R5 595 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CBX8Q9HC52 389 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 PRMT7Q9NVM4 692 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CGNQ9P2M7 1197 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CDY2AQ9Y6F7 541 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 EVPLQ92817 2033 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 ZMYM2Q9UBW7 1377 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 SMG1Q96Q15 3661 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 NBEAQ8NFP9 2946 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 TRIM49BA6NDI0 452 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 PDXKO00764 312 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 IKBKBO14920 756 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 PI15O43692 258 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 HOXB3P14651 431 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 SNRPFP62306 86 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 MBTD1Q05BQ5 628 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 NCBP1Q09161 790 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 KCNA1Q09470 495 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 PRPF4BQ13523 1007 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 PCBP1Q15365 356 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 EDRF1Q3B7T1 1238 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 SPATA1Q5VX52 437 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 CENPPQ6IPU0 288 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 LUZP1Q86V48 1076 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 VN1R2Q8NFZ6 395 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 ENOX1Q8TC92 643 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 ZNF689Q96CS4 500 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 CELF4Q9BZC1 486 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 S1PR5Q9H228 398 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 ADAMTS10Q9H324 1103 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 KCTD10Q9H3F6 313 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 IFT122Q9HBG6 1241 aa13.15□□□□□ -0.3
SHKBP1-213ENST00000597325 ZFYVE26Q68DK2 2539 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 KIAA1671Q9BY89 1806 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 FANCMQ8IYD8 2048 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 ITGB1P05556 798 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 DARSP14868 501 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 AOC1P19801 751 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 EIF4BP23588 611 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 RPL13P26373 211 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 HOXD13P35453 343 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 MATR3P43243 847 aaKnown RBP eCLIP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 ATXN1P54253 815 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 RBM10P98175 930 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 HSP90AA2PQ14568 343 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 ANKRD40Q6AI12 368 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 TTI2Q6NXR4 508 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 ARMCX5Q6P1M9 558 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 FOXR2Q6PJQ5 311 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 TAS1R3Q7RTX0 852 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 CATSPER4Q7RTX7 472 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 RBM23Q86U06 439 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 GAS2L3Q86XJ1 694 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 DHX40Q8IX18 779 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 DCLK2Q8N568 766 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 CSGALNACT2Q8N6G5 542 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 NOC3LQ8WTT2 800 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 SEPT8Q92599 483 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 AGPAT3Q9NRZ7 376 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 NFE2L3Q9Y4A8 694 aa13.14□□□□□ -0.31
SHKBP1-213ENST00000597325 CNTNAP2Q9UHC6 1331 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 GOLGA6L3A6NEY3 463 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 ACKR2O00590 384 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 TGFB1I1O43294 461 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 PIGRP01833 764 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 NR3C1P04150 777 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 NPR3P17342 541 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 NR2F2P24468 414 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 PMS1P54277 932 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 FKBP3Q00688 224 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 FAM187BQ17R55 369 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 ZCWPW2Q504Y3 356 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 ATF7IP2Q5U623 682 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 SLFN12LQ6IEE8 588 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 ZPBP2Q6X784 338 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 APBB1IPQ7Z5R6 666 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 FAM114A1Q8IWE2 563 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 RUBCNQ92622 972 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 TARS2Q9BW92 718 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 FZD8Q9H461 694 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 MINDY3Q9H8M7 445 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 ANKFY1Q9P2R3 1169 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 MAGEC2Q9UBF1 373 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 TRAF3IP3Q9Y228 551 aa13.13□□□□□ -0.31
SHKBP1-213ENST00000597325 LOC400499M0QZD8 3231 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 N4BP3O15049 544 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 CETN3O15182 167 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 CSDE1O75534 798 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 TOM1L1O75674 476 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 ADRB1P08588 477 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 SP100P23497 879 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 CYP2J2P51589 502 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 MGAT3Q09327 533 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 KCNC3Q14003 757 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 IQCB1Q15051 598 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms