RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SPATA21Q7Z572 469 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 GMCL1P1Q8NEA9 526 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 SPOCK2Q92563 424 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 VPS37BQ9H9H4 285 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 RAVER2Q9HCJ3 691 aaKnown RBP16.26■□□□□ 0.19
UPF1-204ENST00000596842 SRRM3A6NNA2 597 aaPredicted RBP16.26■□□□□ 0.19
UPF1-204ENST00000596842 ASAP2O43150 1006 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 ANP32DO95626 131 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 KRT10P13645 584 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 CCNHP51946 323 aaPredicted RBP16.26■□□□□ 0.19
UPF1-204ENST00000596842 MPP2Q14168 576 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 KRT39Q6A163 491 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 TATDN1Q6P1N9 297 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 ART4Q93070 314 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 MCM8Q9UJA3 840 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 H0Y3Z8 333 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 P4HBP07237 508 aaKnown RBP16.26■□□□□ 0.19
UPF1-204ENST00000596842 CNGA1P29973 690 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 ATP13A4Q4VNC1 1196 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 ZNF394Q53GI3 561 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 RMDN2Q96LZ7 410 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 ETNK1Q9HBU6 452 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 PCDHA3Q9Y5H8 950 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 COL5A3P25940 1745 aaPredicted RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 SMIM24O75264 130 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 KRT16P08779 473 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 ZSCAN5DPP0CG00 497 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 ADRA2BP18089 450 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 PSMC4P43686 418 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 QARSP47897 775 aaKnown RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 RNASELQ05823 741 aaKnown RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 MTMR1Q13613 665 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 CC2D2BQ6DHV5 1058 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 PIGWQ7Z7B1 504 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 PARD3BQ8TEW8 1205 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 SNF8Q96H20 258 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 RPS6KC1Q96S38 1066 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 MXRA8Q9BRK3 442 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 PITPNM3Q9BZ71 974 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 TMEM39BQ9GZU3 492 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 ZNF148Q9UQR1 794 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 DNAJC8O75937 253 aaPredicted RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 PLS3P13797 630 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 NSFP46459 744 aaKnown RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 LACTB2Q53H82 288 aaPredicted RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 CYFIP1Q7L576 1253 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 ZCWPW1Q9H0M4 648 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 SAYSD1Q9NPB0 183 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 KMT5AQ9NQR1 393 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 COL20A1Q9P218 1284 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 NOCTQ9UK39 431 aaKnown RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 ZNF131P52739 623 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 SEZ6Q53EL9 994 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 DACT2Q5SW24 774 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 C1orf220Q5T0J3 134 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 SYCP2LQ5T4T6 812 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 IZUMO3Q5VZ72 239 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 CENPTQ96BT3 561 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 TMEM237Q96Q45 408 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 RAB20Q9NX57 234 aa16.25■□□□□ 0.19
UPF1-204ENST00000596842 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.25■□□□□ 0.19
UPF1-204ENST00000596842 SLC26A4O43511 780 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 NEFHP12036 1026 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 NQO1P15559 274 aaKnown RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 DYNLT1P63172 113 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 CLUL1Q15846 466 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 SLC15A2Q16348 729 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 FBXL13Q8NEE6 735 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 ALG13Q9NP73 1137 aaKnown RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 PICK1Q9NRD5 415 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 GTF3C4Q9UKN8 822 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 NAALADL1Q9UQQ1 740 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.24■□□□□ 0.19
UPF1-204ENST00000596842 ADAMTSL1Q8N6G6 1762 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 EXOC1LA0A1B0GW35 172 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 BHMG1C9JSJ3 638 aaPredicted RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 CETPP11597 493 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 ACOT2P49753 483 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 DRG2P55039 364 aaKnown RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 NCALDP61601 193 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 SV2AQ7L0J3 742 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 FAM71AQ8IYT1 594 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 FITM2Q8N6M3 262 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 AAASQ9NRG9 546 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 CNOT7Q9UIV1 285 aaKnown RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 ETS1P14921 441 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 ERFP50548 548 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 CDR2Q01850 454 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 SPDYE1Q8NFV5 336 aaPredicted RBP16.24■□□□□ 0.19
UPF1-204ENST00000596842 CEP170P1Q96L14 293 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 FNBP1Q96RU3 617 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 CCDC77Q9BR77 488 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 C10orf88Q9H8K7 445 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 SLCO1B3Q9NPD5 702 aa16.24■□□□□ 0.19
UPF1-204ENST00000596842 MGRN1O60291 552 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 ATP9AO75110 1047 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 TTC4O95801 387 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 DMP1Q13316 513 aaPredicted RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 ITIH4Q14624 930 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 P3H1Q32P28 736 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms