RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RIF1Q5UIP0 2472 aaKnown RBP16.51■□□□□ 0.23
TRIM28-205ENST00000595028 SMIM28A0A1B0GU29 152 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 MYMKA6NI61 221 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 CLDN3O15551 220 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 TADA2AO75478 443 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 ABCD1P33897 745 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 LIG4P49917 911 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 CLCN4P51793 760 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 USP41Q3LFD5 358 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 TPRNQ4KMQ1 711 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 KIAA1841Q6NSI8 718 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 ALKAL1Q6UXT8 129 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 DYMQ7RTS9 669 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 SFR1Q86XK3 245 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 MAP4K3Q8IVH8 894 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 GPR65Q8IYL9 337 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 HASPINQ8TF76 798 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 DDX12PQ92771 950 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 UROC1Q96N76 676 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 ACAP3Q96P50 834 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 APOL5Q9BWW9 433 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 HAPLN2Q9GZV7 340 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 ST6GALNAC4Q9H4F1 302 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 RXFP1Q9HBX9 757 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 CNTN3Q9P232 1028 aa16.51■□□□□ 0.23
TRIM28-205ENST00000595028 C2orf16Q68DN1 1984 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 TMEM189-UBE2V1I3L0A0 370 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 TEX28O15482 410 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 MEFVO15553 781 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 CUTAO60888 179 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 ADH1AP07327 375 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 KCNE1P15382 129 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 KLRC2P26717 231 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 NMT1P30419 496 aaKnown RBP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 MATR3P43243 847 aaKnown RBP eCLIP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 GTF2BQ00403 316 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 CBX2Q14781 532 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 RTP2Q5QGT7 225 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 ATL3Q6DD88 541 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 PDILTQ8N807 584 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 KCNG4Q8TDN1 519 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 DNAJC19Q96DA6 116 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 ZMAT2Q96NC0 199 aaKnown RBP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 PANK2Q9BZ23 570 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 GOLGA2P5Q9HBQ8 144 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 SLC38A7Q9NVC3 462 aa16.5■□□□□ 0.23
TRIM28-205ENST00000595028 MTCL1Q9Y4B5 1905 aaKnown RBP16.5■□□□□ 0.23
TRIM28-205ENST00000595028 ANK1P16157 1881 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 GAP43P17677 238 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 CLCNKBP51801 687 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 ITIH3Q06033 890 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SOX4Q06945 474 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-205ENST00000595028 ELAVL2Q12926 359 aaKnown RBP16.49■□□□□ 0.23
TRIM28-205ENST00000595028 E2F4Q16254 413 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SEZ6Q53EL9 994 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 AXDND1Q5T1B0 1012 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SLC39A4Q6P5W5 647 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SHC4Q6S5L8 630 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 FBXL6Q8N531 539 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 RIN2Q8WYP3 895 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-205ENST00000595028 HVCN1Q96D96 273 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 PHF7Q9BWX1 381 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-205ENST00000595028 ADAM7Q9H2U9 754 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SFXN1Q9H9B4 322 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 SEL1LQ9UBV2 794 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 CDH22Q9UJ99 828 aa16.49■□□□□ 0.23
TRIM28-205ENST00000595028 FRMD3A2A2Y4 597 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 FAM189A1O60320 539 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 PPP1R37O75864 691 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 GLUD1P00367 558 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 CLTAP09496 248 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 CXCL8P10145 99 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 CREMQ03060 361 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 DNM1Q05193 864 aaKnown RBP16.48■□□□□ 0.23
TRIM28-205ENST00000595028 UPP1Q16831 310 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 SLC10A6Q3KNW5 377 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 ZC2HC1CQ53FD0 456 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-205ENST00000595028 RARS2Q5T160 578 aaKnown RBP16.48■□□□□ 0.23
TRIM28-205ENST00000595028 FAM171A1Q5VUB5 890 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 CES5AQ6NT32 575 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 C12orf76Q8N812 135 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-205ENST00000595028 C3orf58Q8NDZ4 430 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 PIK3R5Q8WYR1 880 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 ATOH1Q92858 354 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-205ENST00000595028 NECTIN4Q96NY8 510 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 TTPALQ9BTX7 342 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 TNMDQ9H2S6 317 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 OLFML3Q9NRN5 406 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 FNIP2Q9P278 1114 aa16.48■□□□□ 0.23
TRIM28-205ENST00000595028 FAM186AA6NE01 2351 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 LOC730098B7Z3J9 87 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 PODXLO00592 558 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 OGTO15294 1046 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 B3GAT3O94766 335 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 TNFSF9P41273 254 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 ME1P48163 572 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 ZXDAP98168 799 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 KYAT1Q16773 422 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 ZBTB41Q5SVQ8 909 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms