RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PEX3P56589 373 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 OSTNP61366 133 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 CREMQ03060 361 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 PKP1Q13835 747 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 PPP2R5AQ15172 486 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 ANGPT1Q15389 498 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 PPM1LQ5SGD2 360 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 FOXD4L5Q5VV16 416 aaPredicted RBP13.71□□□□□ -0.21
UPF1-203ENST00000594504 PARM1Q6UWI2 310 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 CCDC105Q8IYK2 499 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 FOXD4L4Q8WXT5 416 aaPredicted RBP13.71□□□□□ -0.21
UPF1-203ENST00000594504 IFT74Q96LB3 600 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 PPP1R10Q96QC0 940 aaKnown RBP13.71□□□□□ -0.21
UPF1-203ENST00000594504 USP28Q96RU2 1077 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 RTP3Q9BQQ7 232 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 MMTAG2Q9BU76 263 aaKnown RBP13.71□□□□□ -0.21
UPF1-203ENST00000594504 HCFC1R1Q9NWW0 138 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.71□□□□□ -0.21
UPF1-203ENST00000594504 ZDBF2Q9HCK1 2354 aa13.71□□□□□ -0.22
UPF1-203ENST00000594504 COL4A3Q01955 1670 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 PRR23AA6NEV1 266 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 SFI1A8K8P3 1242 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 SLC26A4O43511 780 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 B3GAT3O94766 335 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 DCNP07585 359 aaKnown RBP13.7□□□□□ -0.22
UPF1-203ENST00000594504 SRFP11831 508 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 FGFR3P22607 806 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 TKTP29401 623 aaKnown RBP13.7□□□□□ -0.22
UPF1-203ENST00000594504 NASPP49321 788 aaPredicted RBP13.7□□□□□ -0.22
UPF1-203ENST00000594504 CEBPZQ03701 1054 aaKnown RBP13.7□□□□□ -0.22
UPF1-203ENST00000594504 SOX4Q06945 474 aaPredicted RBP13.7□□□□□ -0.22
UPF1-203ENST00000594504 HTR4Q13639 388 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 SLC39A14Q15043 492 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 DCAF4L1Q3SXM0 396 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 SPECC1Q5M775 1068 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 HYIQ5T013 277 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 DCLRE1AQ6PJP8 1040 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 TAS1R3Q7RTX0 852 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 KCTD17Q8N5Z5 321 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 C3orf58Q8NDZ4 430 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 ITFG1Q8TB96 612 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 FGF14Q92915 247 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 NXPE3Q969Y0 559 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 TBC1D17Q9HA65 648 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 TNFSF13BQ9Y275 285 aa13.7□□□□□ -0.22
UPF1-203ENST00000594504 SMIM28A0A1B0GU29 152 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 HIP1RO75146 1068 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 LRRN2O75325 713 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 RFX1P22670 979 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 MARCKSP29966 332 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 NPTX2P47972 431 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 EFNA5P52803 228 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 GPC5P78333 572 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 RAB33AQ14088 237 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 UPP1Q16831 310 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 AXDND1Q5T1B0 1012 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 LIN9Q5TKA1 542 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 ATL3Q6DD88 541 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 KCNK18Q7Z418 384 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 DAW1Q8N136 415 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 TMEM130Q8N3G9 435 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 SLC7A14Q8TBB6 771 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 KIFAP3Q92845 792 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 NKD2Q969F2 451 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 ZBTB45Q96K62 511 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 ZMAT2Q96NC0 199 aaKnown RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 ACO2Q99798 780 aaKnown RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 RUSC1Q9BVN2 902 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 TARS2Q9BW92 718 aaKnown RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 CDT1Q9H211 546 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 PTPRHQ9HD43 1115 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 DNMT3BQ9UBC3 853 aaKnown RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 FBXO2Q9UK22 296 aaPredicted RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 CDH7Q9ULB5 785 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 DNM3Q9UQ16 869 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 SRPRBQ9Y5M8 271 aaKnown RBP13.69□□□□□ -0.22
UPF1-203ENST00000594504 CDY1Q9Y6F8 540 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 NOTCH4Q99466 2003 aa13.69□□□□□ -0.22
UPF1-203ENST00000594504 MYH15Q9Y2K3 1946 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 YEATS4O95619 227 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 HNRNPA1P09651 372 aaKnown RBP eCLIP13.68□□□□□ -0.22
UPF1-203ENST00000594504 UBA7P41226 1012 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 GRIN1Q05586 938 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 RAD51AP2Q09MP3 1159 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 ELAVL2Q12926 359 aaKnown RBP13.68□□□□□ -0.22
UPF1-203ENST00000594504 STK38Q15208 465 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 ZRSR1Q15695 479 aaKnown RBP13.68□□□□□ -0.22
UPF1-203ENST00000594504 SEZ6Q53EL9 994 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 RINT1Q6NUQ1 792 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 POTEHQ6S545 545 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 ALKAL1Q6UXT8 129 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 LINC00301Q8NCQ3 95 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 ING5Q8WYH8 240 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 FGF13Q92913 245 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 DDX27Q96GQ7 796 aaKnown RBP13.68□□□□□ -0.22
UPF1-203ENST00000594504 CDK5RAP3Q96JB5 506 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 PLIN2Q99541 437 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 MTRRQ9UBK8 725 aa13.68□□□□□ -0.22
UPF1-203ENST00000594504 TMEM189-UBE2V1I3L0A0 370 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms