RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SNW1Q13573 536 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 ENOX2Q16206 610 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 UPP1Q16831 310 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 KIAA1841Q6NSI8 718 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 ARMCX5Q6P1M9 558 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 FUT10Q6P4F1 479 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 GLIS3Q8NEA6 775 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 ENGASEQ8NFI3 743 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 RABGGTAQ92696 567 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 FAM212AQ96EL1 285 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 TIGD1Q96MW7 591 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 IPO9Q96P70 1041 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 PAAF1Q9BRP4 392 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 IKZF4Q9H2S9 585 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 ASB7Q9H672 318 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 MRPL17Q9NRX2 175 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 CLDND1Q9NY35 253 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 HOOK1Q9UJC3 728 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 PCDHGC5Q9Y5F6 944 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 TTC28Q96AY4 2481 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 C2orf71A6NGG8 1288 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 HIDE1A8MVS5 230 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 TMEM189-UBE2V1I3L0A0 370 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 PER2O15055 1255 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 MEFVO15553 781 aaPredicted RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 TRAPPC3O43617 180 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 B3GAT3O94766 335 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 KIF20AO95235 890 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 EFEMP2O95967 443 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 CYP3A5P20815 502 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 MRPS5P82675 430 aaKnown RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 ELAVL2Q12926 359 aaKnown RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 ADAM15Q13444 863 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 COL19A1Q14993 1142 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 DUSP6Q16828 381 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 BMT2Q1RMZ1 405 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 CTC1Q2NKJ3 1217 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 USP41Q3LFD5 358 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 ZBTB41Q5SVQ8 909 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 EP400NLQ6ZTU2 488 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 RNF168Q8IYW5 571 aaPredicted RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 EFHBQ8N7U6 833 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 SCFD1Q8WVM8 642 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 KIF12Q96FN5 646 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 HERC2P3Q9BVR0 1158 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 VN1R3Q9BXE9 311 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 EMILIN2Q9BXX0 1053 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 UBE2ZQ9H832 354 aaPredicted RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 CGNQ9P2M7 1197 aaKnown RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 CACNG4Q9UBN1 327 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 UBQLN1Q9UMX0 589 aaKnown RBP16.34■□□□□ 0.21
UPF1-202ENST00000594243 DERAQ9Y315 318 aa16.34■□□□□ 0.21
UPF1-202ENST00000594243 SF3B1O75533 1304 aaKnown RBP eCLIP16.34■□□□□ 0.21
UPF1-202ENST00000594243 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.33■□□□□ 0.2
UPF1-202ENST00000594243 F8W810 466 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 RHOBTB3O94955 611 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 KIF4AO95239 1232 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 IL18RAPO95256 599 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 URODP06132 367 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 PRR29P0C7W0 189 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 SRGAP2BP0DMP2 458 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GTF2F1P35269 517 aaKnown RBP eCLIP16.33■□□□□ 0.2
UPF1-202ENST00000594243 HOXD13P35453 343 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GLUD2P49448 558 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 SOX4Q06945 474 aaPredicted RBP16.33■□□□□ 0.2
UPF1-202ENST00000594243 STK4Q13043 487 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 KCNB1Q14721 858 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 ZBTB6Q15916 424 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 KNOP1Q1ED39 458 aaKnown RBP16.33■□□□□ 0.2
UPF1-202ENST00000594243 CRELD2Q6UXH1 353 aaPredicted RBP16.33■□□□□ 0.2
UPF1-202ENST00000594243 HS2ST1Q7LGA3 356 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 TAS1R1Q7RTX1 841 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 NELFCDQ8IXH7 590 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GPR65Q8IYL9 337 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GPD1LQ8N335 351 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 C18orf25Q96B23 403 aaPredicted RBP16.33■□□□□ 0.2
UPF1-202ENST00000594243 CBWD1Q9BRT8 395 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 FAM213AQ9BRX8 229 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GPR62Q9BZJ7 368 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 PCIF1Q9H4Z3 704 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 GOLGA2P5Q9HBQ8 144 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 KIAA1586Q9HCI6 787 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 CHST7Q9NS84 486 aa16.33■□□□□ 0.2
UPF1-202ENST00000594243 PODXLO00592 558 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 EXTL3O43909 919 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 DSG1Q02413 1049 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 SPAG1Q07617 926 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 PTPN14Q15678 1187 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 KIAA0319Q5VV43 1072 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 NT5DC4Q86YG4 428 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 ELOA2Q8IYF1 753 aaPredicted RBP16.32■□□□□ 0.2
UPF1-202ENST00000594243 BEST2Q8NFU1 509 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 GOLGA5Q8TBA6 731 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 HASPINQ8TF76 798 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 AUTS2Q8WXX7 1259 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 SAAL1Q96ER3 474 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 ASB2Q96Q27 587 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 RMND1Q9NWS8 449 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 C2CD2Q9Y426 696 aa16.32■□□□□ 0.2
UPF1-202ENST00000594243 SPTBN5Q9NRC6 3674 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms