RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ATXN7L2Q5T6C5 722 aaPredicted RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 GADL1Q6ZQY3 521 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 SPRED1Q7Z699 444 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 ZGPATQ8N5A5 531 aaKnown RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 OR10H5Q8NGA6 315 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 CLPTM1LQ96KA5 538 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 PSMD1Q99460 953 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 KCNH6Q9H252 994 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 TCF7L1Q9HCS4 588 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 EIF2B4Q9UI10 523 aaKnown RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 THRAP3Q9Y2W1 955 aaKnown RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 CFAP20Q9Y6A4 193 aaKnown RBP6.31□□□□□ -1.4
SMAD4-216ENST00000593223 ATRNL1Q5VV63 1379 aa6.31□□□□□ -1.4
SMAD4-216ENST00000593223 XDHP47989 1333 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 ARID4BQ4LE39 1312 aaPredicted RBP6.3□□□□□ -1.4
SMAD4-216ENST00000593223 PTPRMP28827 1452 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 KLRG2A4D1S0 409 aaPredicted RBP6.3□□□□□ -1.4
SMAD4-216ENST00000593223 SGTAO43765 313 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 PDCP20941 246 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 MTM1Q13496 603 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 C1QL3Q5VWW1 255 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 ZNF529Q6P280 563 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 GPRIN1Q7Z2K8 1008 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 CATIPQ7Z7H3 387 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 TTC7BQ86TV6 843 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 TMPRSS6Q8IU80 811 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
SMAD4-216ENST00000593223 PLEKHG4BQ96PX9 1271 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 NUP88Q99567 741 aaPredicted RBP6.3□□□□□ -1.4
SMAD4-216ENST00000593223 RHOBTB2Q9BYZ6 727 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 PARPBPQ9NWS1 579 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 SORCS3Q9UPU3 1222 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 CEP170Q5SW79 1584 aa6.3□□□□□ -1.4
SMAD4-216ENST00000593223 RAD54L2Q9Y4B4 1467 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 WNT10BO00744 389 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 RECQL4O94761 1208 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 POMCP01189 267 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 AKAP5P24588 427 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 TARDBPQ13148 414 aaKnown RBP eCLIP6.29□□□□□ -1.4
SMAD4-216ENST00000593223 IFIT1BQ5T764 474 aaKnown RBP6.29□□□□□ -1.4
SMAD4-216ENST00000593223 OTUD7BQ6GQQ9 843 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 RNF207Q6ZRF8 634 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 USP45Q70EL2 814 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 UBE3BQ7Z3V4 1068 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 IL17DQ8TAD2 202 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 LRGUKQ96M69 825 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 MYOCQ99972 504 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 NDC1Q9BTX1 674 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 RTFDC1Q9BY42 306 aaPredicted RBP6.29□□□□□ -1.4
SMAD4-216ENST00000593223 CDH19Q9H159 772 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 PNMA8BQ9ULN7 279 aaPredicted RBP6.29□□□□□ -1.4
SMAD4-216ENST00000593223 EID1Q9Y6B2 187 aa6.29□□□□□ -1.4
SMAD4-216ENST00000593223 C1QTNF3-AMACRE9PGA6 284 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 KIAA0391O15091 583 aaKnown RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 FAM20BO75063 409 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 SCAF4O95104 1147 aaKnown RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 POU2F2P09086 479 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 ALAS1P13196 640 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 CTXN1P60606 82 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 NHLH2Q02577 135 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 RAB39AQ14964 217 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 PPP2R5AQ15172 486 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 CCDC157Q569K6 752 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 NAIF1Q69YI7 327 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 DRICH1Q6PGQ1 229 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 HTR3DQ70Z44 454 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 TICAM2Q86XR7 235 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 CPT1CQ8TCG5 803 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 GTPBP4Q9BZE4 634 aaKnown RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 C11orf54Q9H0W9 315 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 MAN1C1Q9NR34 630 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 NOB1Q9ULX3 412 aaKnown RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 PCDHB1Q9Y5F3 818 aa6.28□□□□□ -1.4
SMAD4-216ENST00000593223 MAGI1Q96QZ7 1491 aaPredicted RBP6.28□□□□□ -1.4
SMAD4-216ENST00000593223 PPRC1Q5VV67 1664 aaKnown RBP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 TCRBV7S2A1N4TA0A589 114 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 OFD1O75665 1012 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 APOBEC3AP31941 199 aaPredicted RBP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 CYP2C19P33261 490 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 ATP8B2P98198 1209 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 PUM1Q14671 1186 aaKnown RBP eCLIP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 ZXDCQ2QGD7 858 aaPredicted RBP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 PGS1Q32NB8 556 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 RABL3Q5HYI8 236 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 THEMIS2Q5TEJ8 643 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 SEM1Q6ZVN7 128 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 MED25Q71SY5 747 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 PLXDC1Q8IUK5 500 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 TPH2Q8IWU9 490 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 GRAMD1CQ8IYS0 662 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 CHPFQ8IZ52 775 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 CAMKK2Q96RR4 588 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 MAP3K14Q99558 947 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 REXO4Q9GZR2 422 aaKnown RBP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 SLC23A1Q9UHI7 598 aa6.27□□□□□ -1.41
SMAD4-216ENST00000593223 MED1Q15648 1581 aaPredicted RBP6.27□□□□□ -1.41
SMAD4-216ENST00000593223 PNPLA7Q6ZV29 1317 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 DRGXA6NNA5 263 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 LEFTY2O00292 366 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms