RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MAML2Q8IZL2 1156 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 ST13P5Q8NFI4 369 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 PJA1Q8NG27 643 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 DEPTORQ8TB45 409 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 ITFG1Q8TB96 612 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 DDX27Q96GQ7 796 aaKnown RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 C8orf76Q96K31 380 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 UROC1Q96N76 676 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 ACO2Q99798 780 aaKnown RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 BHMT2Q9H2M3 363 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 AVENQ9NQS1 362 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 DNMT3BQ9UBC3 853 aaKnown RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 SIT1Q9Y3P8 196 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 BACE2Q9Y5Z0 518 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 SMIM28A0A1B0GU29 152 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 MEFVO15553 781 aaPredicted RBP12.91□□□□□ -0.34
CLIP3-204ENST00000590559 DCNP07585 359 aaKnown RBP12.91□□□□□ -0.34
CLIP3-204ENST00000590559 PROZP22891 400 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 TKTP29401 623 aaKnown RBP12.91□□□□□ -0.34
CLIP3-204ENST00000590559 GRM5P41594 1212 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 MAPK7Q13164 816 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 GLRA4Q5JXX5 417 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 SLC8B1Q6J4K2 584 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 MTSS1LQ765P7 747 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 C1orf210Q8IVY1 113 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 CCDC83Q8IWF9 413 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 NPAS3Q8IXF0 933 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 CEP120Q8N960 986 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 SLC7A14Q8TBB6 771 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 IFT74Q96LB3 600 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 KIF2CQ99661 725 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 CDT1Q9H211 546 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 TMEM134Q9H6X4 195 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 GOLGA2P5Q9HBQ8 144 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 HCFC1R1Q9NWW0 138 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 PPP4R2Q9NY27 417 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 ARHGAP28Q9P2N2 729 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 KCNH3Q9ULD8 1083 aa12.91□□□□□ -0.34
CLIP3-204ENST00000590559 ARHGEF37A1IGU5 675 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 SHISA7A6NL88 538 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 K7ERI5 159 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 XYLBO75191 536 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 LRRN2O75325 713 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 B3GAT3O94766 335 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 ABLIM3O94929 683 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 SP9P0CG40 484 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 CCT6AP40227 531 aaKnown RBP12.9□□□□□ -0.34
CLIP3-204ENST00000590559 NPTX2P47972 431 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 MRPL58Q14197 206 aaKnown RBP12.9□□□□□ -0.34
CLIP3-204ENST00000590559 NBR1Q14596 966 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 IL17AQ16552 155 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 ZMAT2Q96NC0 199 aaKnown RBP12.9□□□□□ -0.34
CLIP3-204ENST00000590559 FOXQ1Q9C009 403 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 DDX19AQ9NUU7 478 aaKnown RBP12.9□□□□□ -0.34
CLIP3-204ENST00000590559 LRWD1Q9UFC0 647 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 KIAA1024Q9UPX6 916 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 CDY1Q9Y6F8 540 aa12.9□□□□□ -0.34
CLIP3-204ENST00000590559 PHLPP2Q6ZVD8 1323 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 KANSL1LA0AUZ9 987 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 I3L4J1 428 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 STK25O00506 426 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 EIF5BO60841 1220 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 LMNAP02545 664 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 KCNE1P15382 129 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 LIG1P18858 919 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 BRCC3P46736 316 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 HMGN5P82970 282 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 ROR1Q01973 937 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 PRKCQQ04759 706 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 PTGDRQ13258 359 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 TMEM132AQ24JP5 1023 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 SLC5A9Q2M3M2 681 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 PABPC1LQ4VXU2 614 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 SPECC1Q5M775 1068 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 ANKS3Q6ZW76 656 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 C1orf186Q6ZWK4 172 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 ERMP1Q7Z2K6 904 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 ZNF461Q8TAF7 563 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 SHDQ96IW2 340 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 NTPCRQ9BSD7 190 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 MMTAG2Q9BU76 263 aaKnown RBP12.89□□□□□ -0.35
CLIP3-204ENST00000590559 OSBPL6Q9BZF3 934 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 CNTN3Q9P232 1028 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 PCDHB6Q9Y5E3 794 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 STK24Q9Y6E0 443 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 R4GN57 208 aa12.89□□□□□ -0.35
CLIP3-204ENST00000590559 WDR27A2RRH5 827 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 E9PMD0 336 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 TRAPPC3O43617 180 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 ECI2O75521 394 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 PRPHP41219 470 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 PEX3P56589 373 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 FZD5Q13467 585 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 SNW1Q13573 536 aaKnown RBP12.88□□□□□ -0.35
CLIP3-204ENST00000590559 MLF2Q15773 248 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-204ENST00000590559 ZNF528Q3MIS6 628 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 SLC44A4Q53GD3 710 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 PRSS36Q5K4E3 855 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 ERICH6BQ5W0A0 696 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 RINT1Q6NUQ1 792 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms