RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ODF2LQ9ULJ1 636 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 TNFSF13BQ9Y275 285 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 RBM19Q9Y4C8 960 aaKnown RBP12.32□□□□□ -0.44
SMAD4-211ENST00000590499 HIDE1A8MVS5 230 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 SLC16A4O15374 487 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 LINC01565O15544 149 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 YEATS4O95619 227 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 GLP2RO95838 553 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 EFEMP2O95967 443 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 HSP90AA1P07900 732 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 MAPTP10636 758 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 PROZP22891 400 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 NRIP1P48552 1158 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 NCKAP1LP55160 1127 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 KRT17Q04695 432 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 DLX2Q07687 328 aaPredicted RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 KCNC3Q14003 757 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 DUSP6Q16828 381 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 DCAF4L1Q3SXM0 396 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 ATF7IP2Q5U623 682 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 PLPP4Q5VZY2 271 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 DDX53Q86TM3 631 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 ADAMTS19Q8TE59 1207 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 LARP4BQ92615 738 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 PPP2R3CQ969Q6 453 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 TMEM169Q96HH4 297 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 ACO2Q99798 780 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 TCF25Q9BQ70 676 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 GBP3Q9H0R5 595 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 ZBP1Q9H171 429 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 CXCL16Q9H2A7 254 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 NGRNQ9NPE2 291 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 MARCH5Q9NX47 278 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 CLDND1Q9NY35 253 aa12.31□□□□□ -0.44
SMAD4-211ENST00000590499 PDCD11Q14690 1871 aaKnown RBP12.31□□□□□ -0.44
SMAD4-211ENST00000590499 A0A087X0B3 334 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 H3BQ06 376 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 PTGESO14684 152 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 NRP1O14786 923 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 SPTLC2O15270 562 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 PPP6R2O75170 966 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 RECQL4O94761 1208 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 BRD1O95696 1058 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 DDIT3P35638 169 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 GRIK3Q13003 919 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 GIT2Q14161 759 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 STK38Q15208 465 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 NAB2Q15742 525 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 RNF168Q8IYW5 571 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 VN1R2Q8NFZ6 395 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 RASSF8Q8NHQ8 419 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 MICAL1Q8TDZ2 1067 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 MSLNLQ96KJ4 702 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 ZNF396Q96N95 335 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 FIZ1Q96SL8 496 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 CDCA3Q99618 268 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 ADPGKQ9BRR6 497 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 TARS2Q9BW92 718 aaKnown RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 MRPL4Q9BYD3 311 aaKnown RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 CDT1Q9H211 546 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 IGFLR1Q9H665 355 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 TLE6Q9H808 572 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 ENTPD7Q9NQZ7 604 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 SNTG2Q9NY99 539 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 KLK14Q9P0G3 267 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 CLEC1BQ9P126 229 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 LARSQ9P2J5 1176 aaKnown RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 TFIP11Q9UBB9 837 aaKnown RBP12.3□□□□□ -0.44
SMAD4-211ENST00000590499 PARP2Q9UGN5 583 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 KCNG1Q9UIX4 513 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 IRAK3Q9Y616 596 aa12.3□□□□□ -0.44
SMAD4-211ENST00000590499 TCHHQ07283 1943 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 C2orf71A6NGG8 1288 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 PER2O15055 1255 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 ALDH2P05091 517 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 VSIG8P0DPA2 414 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 CTSAP10619 480 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 VARSP26640 1264 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 GSK3AP49840 483 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 SMTNP53814 917 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 RBM10P98175 930 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 DHX8Q14562 1220 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 SMC1AQ14683 1233 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 TMEM132AQ24JP5 1023 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 FOXD4L5Q5VV16 416 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 TMC7Q7Z402 723 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 RBM23Q86U06 439 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 VPS52Q8N1B4 723 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 MRPL43Q8N983 215 aaKnown RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 FOXD4L4Q8WXT5 416 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 NECAB3Q96P71 396 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 FAM193BQ96PV7 902 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-211ENST00000590499 PARVGQ9HBI0 331 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 CCDC39Q9UFE4 941 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 FAN1Q9Y2M0 1017 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 TRIOO75962 3097 aa12.29□□□□□ -0.44
SMAD4-211ENST00000590499 FSD2A1L4K1 749 aa12.28□□□□□ -0.44
SMAD4-211ENST00000590499 F8W810 466 aa12.28□□□□□ -0.44
SMAD4-211ENST00000590499 TOM1L1O75674 476 aa12.28□□□□□ -0.44
SMAD4-211ENST00000590499 FAM13AO94988 1023 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms