RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 CRELD2Q6UXH1 353 aaPredicted RBP13.71□□□□□ -0.21
VMP1-202ENST00000585847 TMC6Q7Z403 805 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 ZBTB33Q86T24 672 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 ZSCAN30Q86W11 494 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 ZNF397Q8NF99 534 aaPredicted RBP13.71□□□□□ -0.21
VMP1-202ENST00000585847 BICD1Q96G01 975 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 FAM81BQ96LP2 452 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 PANX2Q96RD6 677 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 ELAC1Q9H777 363 aaKnown RBP13.71□□□□□ -0.21
VMP1-202ENST00000585847 PRDM6Q9NQX0 595 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 TAB2Q9NYJ8 693 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 FBXL5Q9UKA1 691 aa13.71□□□□□ -0.21
VMP1-202ENST00000585847 PRUNE2Q8WUY3 3088 aa13.71□□□□□ -0.22
VMP1-202ENST00000585847 CDH23Q9H251 3354 aa13.71□□□□□ -0.22
VMP1-202ENST00000585847 KIAA1671Q9BY89 1806 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 ZBBXA8MT70 800 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 CLIC2O15247 247 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 AKAP3O75969 853 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 MCF2P10911 925 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 FGFR1P11362 822 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 TNFSF9P41273 254 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 AFF1P51825 1210 aaKnown RBP13.7□□□□□ -0.22
VMP1-202ENST00000585847 AP3M2P53677 418 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 BFSP1Q12934 665 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 TBX2Q13207 712 aaPredicted RBP13.7□□□□□ -0.22
VMP1-202ENST00000585847 GRIN2CQ14957 1233 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 NOLC1Q14978 699 aaKnown RBP eCLIP13.7□□□□□ -0.22
VMP1-202ENST00000585847 SURF1Q15526 300 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 DCAF4L1Q3SXM0 396 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 MIIPQ5JXC2 388 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 CLLU1OSQ5K130 101 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 NPAS4Q8IUM7 802 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 TMC2Q8TDI7 906 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 ZNF689Q96CS4 500 aaPredicted RBP13.7□□□□□ -0.22
VMP1-202ENST00000585847 NAP1L5Q96NT1 182 aaPredicted RBP13.7□□□□□ -0.22
VMP1-202ENST00000585847 INTS13Q9NVM9 706 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 TMEM161AQ9NX61 479 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 MIOSQ9NXC5 875 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 SNTG2Q9NY99 539 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 HSPBP1Q9NZL4 362 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 ANKFY1Q9P2R3 1169 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 MYO6Q9UM54 1294 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 ZKSCAN5Q9Y2L8 839 aa13.7□□□□□ -0.22
VMP1-202ENST00000585847 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.7□□□□□ -0.22
VMP1-202ENST00000585847 TDRD15B5MCY1 1934 aaKnown RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 AKR1B15C9JRZ8 316 aaPredicted RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 CLDN3O15551 220 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 CCP110O43303 1012 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 DGKIO75912 1065 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 GJB5O95377 273 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 EOMESO95936 686 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 AMHP03971 560 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 HARSP12081 509 aaKnown RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 AKAP5P24588 427 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 GRM5P41594 1212 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 RAB27AP51159 221 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 WNT7BP56706 349 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 HTRA4P83105 476 aaPredicted RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 ARID5BQ14865 1188 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 TSR1Q2NL82 804 aaKnown RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 CEP135Q66GS9 1140 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 HERC6Q8IVU3 1022 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 GPD1LQ8N335 351 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 GSTCDQ8NEC7 633 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 PHOSPHO2Q8TCD6 241 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 POMGNT1Q8WZA1 660 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 TIFAQ96CG3 184 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 BORCS6Q96GS4 357 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 CASD1Q96PB1 797 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 SLC9A7Q96T83 725 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 GAS2L1Q99501 681 aaPredicted RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 VPS16Q9H269 839 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 PCIF1Q9H4Z3 704 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 ZNF576Q9H609 170 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 PLCB1Q9NQ66 1216 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 SLC4A7Q9Y6M7 1214 aa13.69□□□□□ -0.22
VMP1-202ENST00000585847 SPTBN5Q9NRC6 3674 aaKnown RBP13.69□□□□□ -0.22
VMP1-202ENST00000585847 PES1O00541 588 aaKnown RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 OGTO15294 1046 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 INPPL1O15357 1258 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 EXTL3O43909 919 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 MFAP3LO75121 409 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 OFD1O75665 1012 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 RECQL4O94761 1208 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 ARHGEF15O94989 841 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 UPP2O95045 317 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 ADRB2P07550 413 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 LINC00271P0C7V0 271 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 SKIP12755 728 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 ATP2A2P16615 1042 aaKnown RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 TRIM21P19474 475 aaKnown RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 IBSPP21815 317 aaPredicted RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 MSNP26038 577 aaKnown RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 RABGGTBP53611 331 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 SNRNP35Q16560 246 aaKnown RBP13.68□□□□□ -0.22
VMP1-202ENST00000585847 TMEM132AQ24JP5 1023 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 HSP90AA4PQ58FG1 418 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 XKR4Q5GH76 650 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 TJAP1Q5JTD0 557 aa13.68□□□□□ -0.22
VMP1-202ENST00000585847 FAM117BQ6P1L5 589 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms