RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 UROC1Q96N76 676 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 TCHPQ9BT92 498 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 TIPINQ9BVW5 301 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 SMIM28A0A1B0GU29 152 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 ABLIM1O14639 778 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 HNRNPA1P09651 372 aaKnown RBP eCLIP22.43■■□□□ 1.18
SHMT1-209ENST00000582653 HARSP12081 509 aaKnown RBP22.43■■□□□ 1.18
SHMT1-209ENST00000582653 PLS3P13797 630 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 FGFR3P22607 806 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 CUL4AQ13619 759 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 RAB33AQ14088 237 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 UPP1Q16831 310 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 UVSSAQ2YD98 709 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 ARSHQ5FYA8 562 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 CD300LGQ6UXG3 332 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 FLCNQ8NFG4 579 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 LRRC15Q8TF66 581 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 CCDC94Q9BW85 323 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-209ENST00000582653 FAM86C1Q9NVL1 165 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 FBXL21Q9UKT6 434 aa22.43■■□□□ 1.18
SHMT1-209ENST00000582653 ZFP37Q9Y6Q3 630 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-209ENST00000582653 VPS37CA5D8V6 355 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 ADAM12O43184 909 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 TRAPPC3O43617 180 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 NARSO43776 548 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 AOC1P19801 751 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 PROZP22891 400 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 HOXA9P31269 272 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 YARSP54577 528 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 SOX4Q06945 474 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 DHX8Q14562 1220 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 SF3A1Q15459 793 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 CWF19L1Q69YN2 538 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 TMEM161BQ8NDZ6 487 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 SPIRE2Q8WWL2 714 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 AK8Q96MA6 479 aa22.42■■□□□ 1.18
SHMT1-209ENST00000582653 ZMAT2Q96NC0 199 aaKnown RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 TOPORSQ9NS56 1045 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-209ENST00000582653 ANHXE9PGG2 379 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 MEFVO15553 781 aaPredicted RBP22.41■■□□□ 1.18
SHMT1-209ENST00000582653 PI15O43692 258 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 MCF2P10911 925 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 OR1D2P34982 312 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 UBA7P41226 1012 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 STRN3Q13033 797 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 SEZ6Q53EL9 994 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 PPM1LQ5SGD2 360 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 LIN9Q5TKA1 542 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 MPZL3Q6UWV2 235 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 RTL10Q7L3V2 364 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 BRAPQ7Z569 592 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 GRASPQ7Z6J2 395 aaPredicted RBP22.41■■□□□ 1.18
SHMT1-209ENST00000582653 SIX5Q8N196 739 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 C3orf58Q8NDZ4 430 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 DDX27Q96GQ7 796 aaKnown RBP22.41■■□□□ 1.18
SHMT1-209ENST00000582653 RTP3Q9BQQ7 232 aa22.41■■□□□ 1.18
SHMT1-209ENST00000582653 PROB1E7EW31 1015 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 I3L4J1 428 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 C8AP07357 584 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 MAPTP10636 758 aaKnown RBP22.4■■□□□ 1.18
SHMT1-209ENST00000582653 SRFP11831 508 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 FSHRP23945 695 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 SMTNP53814 917 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 GET4Q7L5D6 327 aaPredicted RBP22.4■■□□□ 1.18
SHMT1-209ENST00000582653 CALML4Q96GE6 196 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 ACAP3Q96P50 834 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 SLC38A7Q9NVC3 462 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 KCND2Q9NZV8 630 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 ANKFY1Q9P2R3 1169 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 MTRRQ9UBK8 725 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 BACE2Q9Y5Z0 518 aa22.4■■□□□ 1.18
SHMT1-209ENST00000582653 MYO15AQ9UKN7 3530 aa22.39■■□□□ 1.18
SHMT1-209ENST00000582653 CFHP08603 1231 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 BRCC3P46736 316 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 KARSQ15046 597 aaKnown RBP22.39■■□□□ 1.17
SHMT1-209ENST00000582653 AXDND1Q5T1B0 1012 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-209ENST00000582653 SNX27Q96L92 541 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 REEP2Q9BRK0 252 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 BLOC1S4Q9NUP1 217 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 CLIC4Q9Y696 253 aa22.39■■□□□ 1.17
SHMT1-209ENST00000582653 TRIP11Q15643 1979 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 XYLBO75191 536 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 TOM1L1O75674 476 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 POU2F2P09086 479 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 KCNE1P15382 129 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 TKTP29401 623 aaKnown RBP22.38■■□□□ 1.17
SHMT1-209ENST00000582653 MCM6Q14566 821 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 RSPO2Q6UXX9 243 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-209ENST00000582653 ANKS3Q6ZW76 656 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 GPBP1Q86WP2 473 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 C18orf25Q96B23 403 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-209ENST00000582653 HAPLN2Q9GZV7 340 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 CDY1Q9Y6F8 540 aa22.38■■□□□ 1.17
SHMT1-209ENST00000582653 DMDP11532 3685 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 KRBA1A5PL33 1030 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 BMP15O95972 392 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 PLCG1P19174 1290 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 RPL9P32969 192 aaKnown RBP22.37■■□□□ 1.17
SHMT1-209ENST00000582653 LONP1P36776 959 aaKnown RBP22.37■■□□□ 1.17
SHMT1-209ENST00000582653 HTR4Q13639 388 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms