RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ENPEPQ07075 957 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 BIRC3Q13489 604 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 PHLDB3Q6NSJ2 640 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 ALKAL1Q6UXT8 129 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 WDR49Q8IV35 697 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 ARHGEF19Q8IW93 802 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 USP38Q8NB14 1042 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 DBF4BQ8NFT6 615 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 SNX27Q96L92 541 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 COQ4Q9Y3A0 265 aa27.14■■□□□ 1.94
SHMT1-207ENST00000580002 HLA-DRAP01903 254 aa27.14■■□□□ 1.93
SHMT1-207ENST00000580002 TRAPPC11Q7Z392 1133 aa27.14■■□□□ 1.93
SHMT1-207ENST00000580002 USP37Q86T82 979 aa27.14■■□□□ 1.93
SHMT1-207ENST00000580002 CAPN11Q9UMQ6 739 aa27.14■■□□□ 1.93
SHMT1-207ENST00000580002 SCN5AQ14524 2016 aa27.14■■□□□ 1.93
SHMT1-207ENST00000580002 TRIM43BA6NCK2 446 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 AKR1B15C9JRZ8 316 aaPredicted RBP27.13■■□□□ 1.93
SHMT1-207ENST00000580002 STX10O60499 249 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 MFAP3LO75121 409 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 IL18RAPO95256 599 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 ATF7P17544 494 aaPredicted RBP27.13■■□□□ 1.93
SHMT1-207ENST00000580002 KYAT1Q16773 422 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 SPOPLQ6IQ16 392 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 LRRC8AQ8IWT6 810 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 BAP1Q92560 729 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 KAT5Q92993 513 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 TATDN2Q93075 761 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 TRIM43Q96BQ3 446 aaPredicted RBP27.13■■□□□ 1.93
SHMT1-207ENST00000580002 VWCEQ96DN2 955 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 RAB20Q9NX57 234 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 TRIP11Q15643 1979 aa27.13■■□□□ 1.93
SHMT1-207ENST00000580002 GOLGA6L6A8MZA4 724 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 PMM2O15305 246 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 P4HA2O15460 535 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 N4BP1O75113 896 aaKnown RBP27.12■■□□□ 1.93
SHMT1-207ENST00000580002 CLTBP09497 229 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 KRT9P35527 623 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 DUOXA2Q1HG44 320 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 E4F1Q66K89 784 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-207ENST00000580002 APBB1IPQ7Z5R6 666 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-207ENST00000580002 DEFB128Q7Z7B8 93 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 RNF169Q8NCN4 708 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 FBXL13Q8NEE6 735 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 ZFP42Q96MM3 310 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 UCHL3P15374 230 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 HSP90AA2PQ14568 343 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-207ENST00000580002 SURF1Q15526 300 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 IQCEQ6IPM2 695 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 AGMOQ6ZNB7 445 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 RRAGAQ7L523 313 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 C18orf25Q96B23 403 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-207ENST00000580002 KIF12Q96FN5 646 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 ASB7Q9H672 318 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 PLCB1Q9NQ66 1216 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 MIOSQ9NXC5 875 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 PLAGL2Q9UPG8 496 aa27.12■■□□□ 1.93
SHMT1-207ENST00000580002 PNMA6AP0CW24 399 aaPredicted RBP27.11■■□□□ 1.93
SHMT1-207ENST00000580002 PLEKHG4Q58EX7 1191 aa27.11■■□□□ 1.93
SHMT1-207ENST00000580002 FIGNQ5HY92 759 aa27.11■■□□□ 1.93
SHMT1-207ENST00000580002 C1orf127Q8N9H9 656 aa27.11■■□□□ 1.93
SHMT1-207ENST00000580002 NUP58Q9BVL2 599 aa27.11■■□□□ 1.93
SHMT1-207ENST00000580002 SIX4Q9UIU6 781 aa27.11■■□□□ 1.93
SHMT1-207ENST00000580002 TMEM191BP0C7N4 346 aa27.1■■□□□ 1.93
SHMT1-207ENST00000580002 YARSP54577 528 aaKnown RBP27.1■■□□□ 1.93
SHMT1-207ENST00000580002 CXorf38Q8TB03 319 aa27.1■■□□□ 1.93
SHMT1-207ENST00000580002 NAA15Q9BXJ9 866 aaKnown RBP27.1■■□□□ 1.93
SHMT1-207ENST00000580002 APOBEC3GQ9HC16 384 aaKnown RBP27.1■■□□□ 1.93
SHMT1-207ENST00000580002 PRDM5Q9NQX1 630 aaPredicted RBP27.1■■□□□ 1.93
SHMT1-207ENST00000580002 LUC7L2Q9Y383 392 aaKnown RBP27.1■■□□□ 1.93
SHMT1-207ENST00000580002 CITO14578 2027 aa27.1■■□□□ 1.93
SHMT1-207ENST00000580002 A0A0U1RQF3 1178 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 PHACTR2O75167 634 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 ITGA4P13612 1032 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 PIK3CAP42336 1068 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 MYL6P60660 151 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 POU5F1Q01860 360 aaKnown RBP27.09■■□□□ 1.93
SHMT1-207ENST00000580002 TMEM132DQ14C87 1099 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 MRPL10Q7Z7H8 261 aaKnown RBP27.09■■□□□ 1.93
SHMT1-207ENST00000580002 RGS18Q9NS28 235 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 CNTN3Q9P232 1028 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 TUBGCP4Q9UGJ1 667 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 SMIM28A0A1B0GU29 152 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 GSDMDP57764 484 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 NCOA4Q13772 614 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 TRIM14Q14142 442 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 ZBTB6Q15916 424 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 GSTCDQ8NEC7 633 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 ANKRD36BP1Q96IX9 119 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 GAD1Q99259 594 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 PLEKHA5Q9HAU0 1116 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 UBE2TQ9NPD8 197 aaPredicted RBP27.09■■□□□ 1.93
SHMT1-207ENST00000580002 CEP72Q9P209 647 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 DNAJC12Q9UKB3 198 aa27.09■■□□□ 1.93
SHMT1-207ENST00000580002 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP27.09■■□□□ 1.934e-6■■■■□ 19.9
SHMT1-207ENST00000580002 LRRC53A6NM62 1247 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 C9IYK1 514 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 PTGESO14684 152 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 MLH1P40692 756 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 CETN1Q12798 172 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 XKR4Q5GH76 650 aa27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms