RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ME1P48163 572 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 CREMQ03060 361 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 UPP1Q16831 310 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 SLC10A6Q3KNW5 377 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 RTP2Q5QGT7 225 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 AXDND1Q5T1B0 1012 aaPredicted RBP26.08■■□□□ 1.77
SHMT1-206ENST00000579558 DCLRE1AQ6PJP8 1040 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 CEP57Q86XR8 500 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 TTPALQ9BTX7 342 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 MRPL44Q9H9J2 332 aaKnown RBP26.08■■□□□ 1.77
SHMT1-206ENST00000579558 PLXNA3P51805 1871 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 GLUD1P00367 558 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 KYAT1Q16773 422 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 PRSS55Q6UWB4 352 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-206ENST00000579558 ZNF720Q7Z2F6 126 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 DHX58Q96C10 678 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 DDX27Q96GQ7 796 aaKnown RBP26.07■■□□□ 1.76
SHMT1-206ENST00000579558 EPHX3Q9H6B9 360 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 SFXN1Q9H9B4 322 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 TBC1D7Q9P0N9 293 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 FNIP2Q9P278 1114 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 CDH22Q9UJ99 828 aa26.07■■□□□ 1.76
SHMT1-206ENST00000579558 PDCD11Q14690 1871 aaKnown RBP26.06■■□□□ 1.76
SHMT1-206ENST00000579558 OGTO15294 1046 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 TNFSF9P41273 254 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 E2F4Q16254 413 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 HERC4Q5GLZ8 1057 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-206ENST00000579558 KANK3Q6NY19 840 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 SLC39A4Q6P5W5 647 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 GLYCTKQ8IVS8 523 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 STAMQ92783 540 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 C18orf25Q96B23 403 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-206ENST00000579558 HVCN1Q96D96 273 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 RPGRIP1Q96KN7 1286 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 MSTO1Q9BUK6 570 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 TNMDQ9H2S6 317 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 CUEDC2Q9H467 287 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 PLEKHA5Q9HAU0 1116 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 PCDHA7Q9UN72 937 aa26.06■■□□□ 1.76
SHMT1-206ENST00000579558 A0A0B4J269 797 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 LOC730098B7Z3J9 87 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 PODXLO00592 558 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 WEE2P0C1S8 567 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 RPL17P18621 184 aaKnown RBP26.05■■□□□ 1.76
SHMT1-206ENST00000579558 IGFBP6P24592 240 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-206ENST00000579558 MTHFRP42898 656 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-206ENST00000579558 IQUBQ8NA54 791 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 C3orf58Q8NDZ4 430 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 PIK3R5Q8WYR1 880 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 RIPOR3Q96MK2 946 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 NECTIN4Q96NY8 510 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 LRRC27Q9C0I9 530 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 MAN1C1Q9NR34 630 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 PANK4Q9NVE7 773 aa26.05■■□□□ 1.76
SHMT1-206ENST00000579558 ANKRD63C9JTQ0 380 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 TRAPPC3O43617 180 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 FAM189A1O60320 539 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 PPP1R37O75864 691 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 PPP2R3AQ06190 1150 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 PSMD5Q16401 504 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 ZBTB41Q5SVQ8 909 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 ELMSAN1Q6PJG2 1045 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 CD300LGQ6UXG3 332 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 TMC5Q6UXY8 1006 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 PALB2Q86YC2 1186 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 RPF1Q9H9Y2 349 aaKnown RBP26.04■■□□□ 1.76
SHMT1-206ENST00000579558 OLFML3Q9NRN5 406 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 KBTBD4Q9NVX7 518 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 FAM13BQ9NYF5 915 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 DPP7Q9UHL4 492 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 RCOR1Q9UKL0 485 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 VWA8A3KMH1 1905 aa26.04■■□□□ 1.76
SHMT1-206ENST00000579558 TTC26A0AVF1 554 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 FRMD3A2A2Y4 597 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 TISP43B9A030 160 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 PI4K2BG5E9Z4 385 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 GCNT3O95395 438 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 RPL9P32969 192 aaKnown RBP26.03■■□□□ 1.76
SHMT1-206ENST00000579558 BRCC3P46736 316 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 ATAT1Q5SQI0 421 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 SLFN12LQ6IEE8 588 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 PDXDC1Q6P996 788 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 CCDC65Q8IXS2 484 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 LNX1Q8TBB1 728 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-206ENST00000579558 KIF12Q96FN5 646 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 STRA6Q9BX79 667 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 C1QTNF1Q9BXJ1 281 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 POMKQ9H5K3 350 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 ZDHHC9Q9Y397 364 aa26.03■■□□□ 1.76
SHMT1-206ENST00000579558 I3L4J1 428 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 MYBP10242 640 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 FGFR3P22607 806 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 AMPD3Q01432 767 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 SPAG1Q07617 926 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 BECN1Q14457 450 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 ENOX2Q16206 610 aaKnown RBP26.02■■□□□ 1.76
SHMT1-206ENST00000579558 L1TD1Q5T7N2 865 aaKnown RBP26.02■■□□□ 1.76
SHMT1-206ENST00000579558 ADALQ6DHV7 355 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 RNF135Q8IUD6 432 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms