RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DNM2P50570 870 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 HSP90AA2PQ14568 343 aaPredicted RBP18.16■□□□□ 0.5
VPS53-218ENST00000575207 PDZD4Q76G19 769 aaPredicted RBP18.16■□□□□ 0.5
VPS53-218ENST00000575207 HDDC3Q8N4P3 179 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 RABGGTAQ92696 567 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 TMEM209Q96SK2 561 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 CEP89Q96ST8 783 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 SENP2Q9HC62 589 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 TBC1D22BQ9NU19 505 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 POLR3BQ9NW08 1133 aaPredicted RBP18.16■□□□□ 0.5
VPS53-218ENST00000575207 GTSE1Q9NYZ3 720 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 ATG2BQ96BY7 2078 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 APBB3O95704 486 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 LRG1P02750 347 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 FTH1P19P0C7X4 201 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 MFAP1P55081 439 aaKnown RBP18.15■□□□□ 0.5
VPS53-218ENST00000575207 PRKCEQ02156 737 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 TRIP6Q15654 476 aaKnown RBP18.15■□□□□ 0.5
VPS53-218ENST00000575207 RHPN2Q8IUC4 686 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 PIP4K2CQ8TBX8 421 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 SUCLA2Q9P2R7 463 aaPredicted RBP18.15■□□□□ 0.5
VPS53-218ENST00000575207 MBD1Q9UIS9 605 aaPredicted RBP18.15■□□□□ 0.5
VPS53-218ENST00000575207 GIT1Q9Y2X7 761 aa18.15■□□□□ 0.5
VPS53-218ENST00000575207 IMMTQ16891 758 aaKnown RBP18.14■□□□□ 0.49
VPS53-218ENST00000575207 TMEM196Q5HYL7 178 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 CYP4A22Q5TCH4 519 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 SLC23A3Q6PIS1 610 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 PLA2G4DQ86XP0 818 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 KSR1Q8IVT5 923 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 PNPLA1Q8N8W4 532 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 TTC8Q8TAM2 541 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 NLRP4Q96MN2 994 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 MTRRQ9UBK8 725 aa18.14■□□□□ 0.49
VPS53-218ENST00000575207 FAM86B1E9PN63 330 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 WISP1O95388 367 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 FOSP01100 380 aaPredicted RBP18.13■□□□□ 0.49
VPS53-218ENST00000575207 FAM86B2P0C5J1 330 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 CD59P13987 128 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 CYP4F3Q08477 520 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 GRIK3Q13003 919 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 USP39Q53GS9 565 aaKnown RBP18.13■□□□□ 0.49
VPS53-218ENST00000575207 TEX2Q8IWB9 1127 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 MAP3K14Q99558 947 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 PAAF1Q9BRP4 392 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 GPR88Q9GZN0 384 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 SNTG2Q9NY99 539 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 SALL3Q9BXA9 1300 aa18.13■□□□□ 0.49
VPS53-218ENST00000575207 NOTCH2Q04721 2471 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 PTPRBP23467 1997 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 IGLV3-22A0A075B6J6 115 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 SREBF1P36956 1147 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 DHPSP49366 369 aaPredicted RBP18.12■□□□□ 0.49
VPS53-218ENST00000575207 ELAVL2Q12926 359 aaKnown RBP18.12■□□□□ 0.49
VPS53-218ENST00000575207 ARHGAP29Q52LW3 1261 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 FSTL4Q6MZW2 842 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 PCSK4Q6UW60 755 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 SYT13Q7L8C5 426 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 SRGAP1Q7Z6B7 1085 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 HASPINQ8TF76 798 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 PGBD1Q96JS3 809 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 EIF2AQ9BY44 585 aaKnown RBP18.12■□□□□ 0.49
VPS53-218ENST00000575207 NIFKQ9BYG3 293 aaKnown RBP18.12■□□□□ 0.49
VPS53-218ENST00000575207 ANO3Q9BYT9 981 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 INVSQ9Y283 1065 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 HES2Q9Y543 173 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 CDY1Q9Y6F8 540 aa18.12■□□□□ 0.49
VPS53-218ENST00000575207 GOLGA4Q13439 2230 aaKnown RBP18.12■□□□□ 0.49
VPS53-218ENST00000575207 OPHN1O60890 802 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 KIF4AO95239 1232 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 BCKDHBP21953 392 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 ZNF76P36508 570 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 GRSF1Q12849 480 aaKnown RBP eCLIP18.11■□□□□ 0.494e-9■■■■■ 30.8
VPS53-218ENST00000575207 MAPK6Q16659 721 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.11■□□□□ 0.49
VPS53-218ENST00000575207 TOGARAM2Q6ZUX3 1019 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 TMPRSS7Q7RTY8 843 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 CATIPQ7Z7H3 387 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 SYT12Q8IV01 421 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 ZNF577Q9BSK1 485 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 MINDY3Q9H8M7 445 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 POLMQ9NP87 494 aaPredicted RBP18.11■□□□□ 0.49
VPS53-218ENST00000575207 TMEM74BQ9NUR3 256 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 CACNG4Q9UBN1 327 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 SAMM50Q9Y512 469 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 BACE2Q9Y5Z0 518 aa18.11■□□□□ 0.49
VPS53-218ENST00000575207 ZMYM2Q9UBW7 1377 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 TNFRSF10BO14763 440 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 IFIT3O14879 490 aaKnown RBP18.1■□□□□ 0.49
VPS53-218ENST00000575207 RNF40O75150 1001 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 EPHA5P54756 1037 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 HAUS6Q7Z4H7 955 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 LEMD2Q8NC56 503 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 ZNF461Q8TAF7 563 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 ZFYVE19Q96K21 471 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 LRRC3BQ96PB8 259 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 LZTS2Q9BRK4 669 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 TCEAL9Q9UHQ7 104 aa18.1■□□□□ 0.49
VPS53-218ENST00000575207 UBR5O95071 2799 aaPredicted RBP18.1■□□□□ 0.49
VPS53-218ENST00000575207 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 TEX51A0A1B0GUA7 166 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms