RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PPFIBP1Q86W92 1011 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 CARNMT1Q8N4J0 409 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 NCOA7Q8NI08 942 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 BRI3BPQ8WY22 251 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 SLC5A5Q92911 643 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 OPTNQ96CV9 577 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 GRHPRQ9UBQ7 328 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 SLC13A4Q9UKG4 626 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 ROBO3Q96MS0 1386 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 VGLL3A8MV65 326 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 ADAMTS3O15072 1205 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 B3GALT2O43825 422 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 NMT2O60551 498 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 PSMA5P28066 241 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 MRE11P49959 708 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 TUBP50607 506 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 PAPOLAP51003 745 aaKnown RBP7.59□□□□□ -1.2
VPS53-217ENST00000575100 NAP1L1P55209 391 aaKnown RBP7.59□□□□□ -1.2
VPS53-217ENST00000575100 GABPAQ06546 454 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 ARHGEF6Q15052 776 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 FAM47AQ5JRC9 791 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 FAM209BQ5JX69 171 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 RNF220Q5VTB9 566 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.59□□□□□ -1.2
VPS53-217ENST00000575100 JADE3Q92613 823 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 MARVELD3Q96A59 401 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 BAG1Q99933 345 aaPredicted RBP7.59□□□□□ -1.2
VPS53-217ENST00000575100 B3GNT5Q9BYG0 378 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 TMEM39BQ9GZU3 492 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 TOMM22Q9NS69 142 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 ABCF3Q9NUQ8 709 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 TBK1Q9UHD2 729 aa7.59□□□□□ -1.2
VPS53-217ENST00000575100 FCF1Q9Y324 198 aaKnown RBP7.59□□□□□ -1.2
VPS53-217ENST00000575100 MGAMO43451 1857 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 MYH1P12882 1939 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 KPNA5O15131 536 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 ZBED4O75132 1171 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 PAPLNO95428 1278 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 ATP6V1B1P15313 513 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 EN2P19622 333 aaPredicted RBP7.58□□□□□ -1.2
VPS53-217ENST00000575100 PMS1P54277 932 aaKnown RBP7.58□□□□□ -1.2
VPS53-217ENST00000575100 GALNT1Q10472 559 aaPredicted RBP7.58□□□□□ -1.2
VPS53-217ENST00000575100 ME3Q16798 604 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 UNC5DQ6UXZ4 953 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 RALYLQ86SE5 291 aaKnown RBP7.58□□□□□ -1.2
VPS53-217ENST00000575100 SULF2Q8IWU5 870 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 CEP57L1Q8IYX8 460 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 BRF1Q92994 677 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 TMEM169Q96HH4 297 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 TMEM41AQ96HV5 264 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 TMX3Q96JJ7 454 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 AGXT2Q9BYV1 514 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 SLC6A16Q9GZN6 736 aa7.58□□□□□ -1.2
VPS53-217ENST00000575100 RANBP6O60518 1105 aaKnown RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 KRT1P04264 644 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ATP2A2P16615 1042 aaKnown RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 MCM5P33992 734 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SCAND1P57086 179 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 VGLL4Q14135 290 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 RRP1BQ14684 758 aaKnown RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 POSTNQ15063 836 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 E2F5Q15329 346 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 UVSSAQ2YD98 709 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ATRNL1Q5VV63 1379 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 TAF3Q5VWG9 929 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PGBD2Q6P3X8 592 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ADAMTSL4Q6UY14 1074 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 RAB11FIP4Q86YS3 637 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 DENND1CQ8IV53 801 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SAMD14Q8IZD0 417 aaPredicted RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 ANKRD52Q8NB46 1076 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 MSANTD4Q8NCY6 345 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SIMC1Q8NDZ2 872 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 IGDCC4Q8TDY8 1250 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 DPF3Q92784 378 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PPP1R14AQ96A00 147 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 TRERF1Q96PN7 1200 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ADPGKQ9BRR6 497 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 KATNAL1Q9BW62 490 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 KIAA1683Q9H0B3 1180 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 KLHL25Q9H0H3 589 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 CCDC68Q9H2F9 335 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PRDM6Q9NQX0 595 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 IL17RBQ9NRM6 502 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PADI4Q9UM07 663 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 CCL15-CCL14A0A0B4J2E2 113 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SOWAHBA6NEL2 793 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SH2B2O14492 632 aaPredicted RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 ENTPD3O75355 529 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 MAFO75444 373 aaPredicted RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 MX2P20592 715 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 CNTFP26441 200 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 SHMT1P34896 483 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 DRG2P55039 364 aaKnown RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 PRMT2P55345 433 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 JAG1P78504 1218 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 TRDNQ13061 729 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ACAP2Q15057 778 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 CCL15Q16663 113 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 C4orf17Q53FE4 359 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms