RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ANP32EQ9BTT0 268 aa18.53■□□□□ 0.56
NUP88-210ENST00000574867 UBQLN1Q9UMX0 589 aaKnown RBP18.53■□□□□ 0.56
NUP88-210ENST00000574867 PLAGL2Q9UPG8 496 aa18.53■□□□□ 0.56
NUP88-210ENST00000574867 GRXCR1A8MXD5 290 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 SMAD3P84022 425 aaKnown RBP18.52■□□□□ 0.56
NUP88-210ENST00000574867 BFSP1Q12934 665 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 LRIT3Q3SXY7 679 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 CCDC40Q4G0X9 1142 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 JADE1Q6IE81 842 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 FRMD5Q7Z6J6 570 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 WDR49Q8IV35 697 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 FIBCD1Q8N539 461 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 ZMAT2Q96NC0 199 aaKnown RBP18.52■□□□□ 0.56
NUP88-210ENST00000574867 CGRRF1Q99675 332 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 CXCL16Q9H2A7 254 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 MIOSQ9NXC5 875 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 MSRAQ9UJ68 235 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 NFE2L3Q9Y4A8 694 aa18.52■□□□□ 0.56
NUP88-210ENST00000574867 IKBKBO14920 756 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 NFICP08651 508 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 MARSP56192 900 aaKnown RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 WNT7BP56706 349 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 DSC1Q08554 894 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 TUSC3Q13454 348 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 PARD3BQ8TEW8 1205 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 CCDC127Q96BQ5 260 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 PBX4Q9BYU1 374 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 TSPY26PQ9H489 355 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 ARMCX3Q9UH62 379 aaPredicted RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 RANBP2P49792 3224 aaKnown RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 KIAA1671Q9BY89 1806 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 DLATP10515 647 aaKnown RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 CYP3A5P20815 502 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 VAMP7P51809 220 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 MCCD1P59942 119 aaPredicted RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 NAB2Q15742 525 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 ZBTB6Q15916 424 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 EFCAB13Q8IY85 973 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 BEST2Q8NFU1 509 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 CACTINQ8WUQ7 758 aaKnown RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 BORCS6Q96GS4 357 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 RWDD3Q9Y3V2 267 aa18.51■□□□□ 0.55
NUP88-210ENST00000574867 MRPL42Q9Y6G3 142 aaKnown RBP18.51■□□□□ 0.55
NUP88-210ENST00000574867 SMTNL1A8MU46 457 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 LAG3P18627 525 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 AP3M2P53677 418 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 CLDN10P78369 228 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 AOPEPQ8N6M6 819 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 CLP1Q92989 425 aaKnown RBP18.5■□□□□ 0.55
NUP88-210ENST00000574867 UROC1Q96N76 676 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 TMEM175Q9BSA9 504 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 CWH43Q9H720 699 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 LCHNA4D1U4 455 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 TMEM191BP0C7N4 346 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 TNNI1P19237 187 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 SPAG1Q07617 926 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 ZNF280BQ86YH2 543 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 PLEKHO2Q8TD55 490 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 ANKRD36BP1Q96IX9 119 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 CNOT6LQ96LI5 555 aaKnown RBP18.5■□□□□ 0.55
NUP88-210ENST00000574867 NRDE2Q9H7Z3 1164 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 AAASQ9NRG9 546 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 INTS13Q9NVM9 706 aa18.5■□□□□ 0.55
NUP88-210ENST00000574867 LINC01553A4QN01 128 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 LRRIQ3A6PVS8 624 aaPredicted RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 TULP1O00294 542 aaPredicted RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 STX10O60499 249 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 ZC3H11AO75152 810 aaKnown RBP eCLIP18.49■□□□□ 0.55
NUP88-210ENST00000574867 DDHD2O94830 711 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 CA3P07451 260 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 TFAMQ00059 246 aaKnown RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 SPOUT1Q5T280 376 aaKnown RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 NLRC5Q86WI3 1866 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 COLGALT2Q8IYK4 626 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 FAM200AQ8TCP9 573 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 MAGEC2Q9UBF1 373 aaPredicted RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 TUBGCP4Q9UGJ1 667 aa18.49■□□□□ 0.55
NUP88-210ENST00000574867 YBX2Q9Y2T7 364 aaKnown RBP18.49■□□□□ 0.55
NUP88-210ENST00000574867 PTPRJQ12913 1337 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 TNNC2P02585 160 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 MYOGP15173 224 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 PBX2P40425 430 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 DUOXA2Q1HG44 320 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 C18orf25Q96B23 403 aaPredicted RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 DDX27Q96GQ7 796 aaKnown RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 BECN2A8MW95 431 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 DNAJB2P25686 324 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 EEF1GP26641 437 aaKnown RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 GTF2H1P32780 548 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 RPL9P32969 192 aaKnown RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 SOX4Q06945 474 aaPredicted RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 NCAPHQ15003 741 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 DCAF17Q5H9S7 520 aaPredicted RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 CDKAL1Q5VV42 579 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 IRF2BP1Q8IU81 584 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 DHX40Q8IX18 779 aaKnown RBP18.48■□□□□ 0.55
NUP88-210ENST00000574867 ZNF558Q96NG5 402 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 SAMD11Q96NU1 681 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 MTMR12Q9C0I1 747 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 HCSTQ9UBK5 93 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms