RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SLC39A4Q6P5W5 647 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 ZBTB33Q86T24 672 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 GPT2Q8TD30 523 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 CASD1Q96PB1 797 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 RPS6KC1Q96S38 1066 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 AAASQ9NRG9 546 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 RNF19AQ9NV58 838 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 PARP2Q9UGN5 583 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 CD207Q9UJ71 328 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 USP20Q9Y2K6 914 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 TBKBP1A7MCY6 615 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 FGFR1P11362 822 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 CLLU1OSQ5K130 101 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 ARMCX5Q6P1M9 558 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 GLIS3Q8NEA6 775 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 CLP1Q92989 425 aaKnown RBP22.41■■□□□ 1.18
VPS53-210ENST00000571456 ZBTB45Q96K62 511 aaPredicted RBP22.41■■□□□ 1.18
VPS53-210ENST00000571456 SNTG2Q9NY99 539 aa22.41■■□□□ 1.18
VPS53-210ENST00000571456 DMDP11532 3685 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 ARL5CA6NH57 179 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 ANKRD63C9JTQ0 380 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 CALUO43852 315 aaPredicted RBP22.4■■□□□ 1.18
VPS53-210ENST00000571456 TBX10O75333 385 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 RECQL4O94761 1208 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 HOXD13P35453 343 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 VCPP55072 806 aaKnown RBP22.4■■□□□ 1.18
VPS53-210ENST00000571456 MORC3Q14149 939 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 CAMK4Q16566 473 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 NFIL3Q16649 462 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 SKOR2Q2VWA4 1001 aaPredicted RBP22.4■■□□□ 1.18
VPS53-210ENST00000571456 FOXR2Q6PJQ5 311 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 THNSL1Q8IYQ7 743 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 HELQQ8TDG4 1101 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 LPPQ93052 612 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 LMAN2LQ9H0V9 348 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 MAN1B1Q9UKM7 699 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 TRAF3IP3Q9Y228 551 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 HES2Q9Y543 173 aa22.4■■□□□ 1.18
VPS53-210ENST00000571456 TRIP11Q15643 1979 aa22.39■■□□□ 1.18
VPS53-210ENST00000571456 PROB1E7EW31 1015 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 PSMA7O14818 248 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 TGFB1I1O43294 461 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 LAG3P18627 525 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 IBSPP21815 317 aaPredicted RBP22.39■■□□□ 1.17
VPS53-210ENST00000571456 ADSSP30520 456 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 GRIK3Q13003 919 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 XKR4Q5GH76 650 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 SLC9A9Q8IVB4 645 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 NELFCDQ8IXH7 590 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 APOL6Q9BWW8 343 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 PLVAPQ9BX97 442 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 RNF39Q9H2S5 420 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 KCTD10Q9H3F6 313 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 RPF1Q9H9Y2 349 aaKnown RBP22.39■■□□□ 1.17
VPS53-210ENST00000571456 AGPAT3Q9NRZ7 376 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 SLC38A7Q9NVC3 462 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 CPSF3Q9UKF6 684 aaKnown RBP22.39■■□□□ 1.17
VPS53-210ENST00000571456 GDAQ9Y2T3 454 aa22.39■■□□□ 1.17
VPS53-210ENST00000571456 EXTL3O43909 919 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 FAM189A1O60320 539 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 RB1P06400 928 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 ADRB2P07550 413 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 HARSP12081 509 aaKnown RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 AKAP5P24588 427 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 RPL13P26373 211 aaKnown RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 RNASELQ05823 741 aaKnown RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 SIGLEC14Q08ET2 396 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 KLHL40Q2TBA0 621 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 EDRF1Q3B7T1 1238 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 CCDC183Q5T5S1 534 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 RBM43Q6ZSC3 357 aaKnown RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 NT5DC4Q86YG4 428 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 GPD1LQ8N335 351 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 DHTKD1Q96HY7 919 aaPredicted RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 FAM193BQ96PV7 902 aaPredicted RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 GAD1Q99259 594 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 TMEM175Q9BSA9 504 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 HAPLN2Q9GZV7 340 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 ASB7Q9H672 318 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 TBC1D13Q9NVG8 400 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 CNTN3Q9P232 1028 aa22.38■■□□□ 1.17
VPS53-210ENST00000571456 PDCD11Q14690 1871 aaKnown RBP22.38■■□□□ 1.17
VPS53-210ENST00000571456 MEIS3P2A8K0S8 358 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 LOC730098B7Z3J9 87 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 C5orf67F2Z3F1 127 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 XPOTO43592 962 aaKnown RBP22.37■■□□□ 1.17
VPS53-210ENST00000571456 IL18RAPO95256 599 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 THP07101 528 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 KCNE1P15382 129 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 AVPR2P30518 371 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 CTNNB1P35222 781 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 MLH1P40692 756 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 LRRC63Q05C16 580 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 PPP2R3AQ06190 1150 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 SURF1Q15526 300 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 ALKAL1Q6UXT8 129 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 ADSSL1Q8N142 457 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 XXYLT1Q8NBI6 393 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 TSG101Q99816 390 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 C11orf84Q9BUA3 381 aaPredicted RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms