RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 METTL7BQ6UX53 244 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 SLFN11Q7Z7L1 901 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 TMEM192Q8IY95 271 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 C17orf75Q9HAS0 396 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 RNF14Q9UBS8 474 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 SNX24Q9Y343 169 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 NUB1Q9Y5A7 615 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 ZC3H4Q9UPT8 1303 aaKnown RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 O00370 1275 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 STAM2O75886 525 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 PRKCBP05771 671 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 PYGMP11217 842 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 HPDP32754 393 aaPredicted RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 RAP1GAPP47736 663 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 NOP14P78316 857 aaKnown RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 CDR2Q01850 454 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 TMEM62Q0P6H9 643 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 TRIP13Q15645 432 aaPredicted RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 GPR162Q16538 588 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 CCDC50Q8IVM0 306 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 RHOT2Q8IXI1 618 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ACTRT1Q8TDG2 376 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 TMC2Q8TDI7 906 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ACSF2Q96CM8 615 aaPredicted RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 HVCN1Q96D96 273 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 GPR20Q99678 358 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 HEMGNQ9BXL5 484 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 DNAJC17Q9NVM6 304 aaKnown RBP10.63□□□□□ -0.71
VPS53-206ENST00000570359 INTUQ9ULD6 942 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 VTNP04004 478 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 FGFR4P22455 802 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 GNA15P30679 374 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 MAPK4P31152 587 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ARL2P36404 184 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ITIH3Q06033 890 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 NCOA4Q13772 614 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 FOXR1Q6PIV2 292 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 UBL4BQ8N7F7 174 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 SCFD2Q8WU76 684 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ATG4AQ8WYN0 398 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 SLC10A4Q96EP9 437 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 RNPEPQ9H4A4 650 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 GDF3Q9NR23 364 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 SBF1O95248 1867 aa10.63□□□□□ -0.71
VPS53-206ENST00000570359 ZNFX1Q9P2E3 1918 aaKnown RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 SPDYE5A6NIY4 337 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ANKRD65E5RJM6 399 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ANXA13P27216 316 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 TMOD1P28289 359 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ICAM3P32942 547 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 NSFP46459 744 aaKnown RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 MYL6P60660 151 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ZNF568Q3ZCX4 644 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 CEP85LQ5SZL2 805 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 SEL1L2Q5TEA6 688 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 EFCAB12Q6NXP0 572 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 EMBQ6PCB8 327 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 MMS22LQ6ZRQ5 1243 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 CCDC25Q86WR0 208 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 RBBP8NLQ8NC74 664 aaPredicted RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 C1orf54Q8WWF1 131 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 MAGOHBQ96A72 148 aaKnown RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 CPB2Q96IY4 423 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 FGD4Q96M96 766 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 FBXL18Q96ME1 805 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ISCUQ9H1K1 167 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 TAF1DQ9H5J8 278 aaPredicted RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 MED4Q9NPJ6 270 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 AKT3Q9Y243 479 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 PLAAQ9Y263 795 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ATP8A1Q9Y2Q0 1164 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 MYPNQ86TC9 1320 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 GOLGA6L10A0A0M3HER8 536 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 SOCS7O14512 581 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ADCY3O60266 1144 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 OSBPP22059 807 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 BRD2P25440 801 aaKnown RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 PLTPP55058 493 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 DR1Q01658 176 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 PSMD6Q15008 389 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ZACNQ401N2 412 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 TTMPQ5BVD1 217 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 EEF1DP3Q658K8 133 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 FAM76AQ8TAV0 307 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 CEP89Q96ST8 783 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 ZSWIM1Q9BR11 485 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 MINDY3Q9H8M7 445 aa10.62□□□□□ -0.71
VPS53-206ENST00000570359 UTP11Q9Y3A2 253 aaKnown RBP10.62□□□□□ -0.71
VPS53-206ENST00000570359 VGLL3A8MV65 326 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 PIK3R2O00459 728 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ATG7O95352 703 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 C4BPAP04003 597 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 CXCL8P10145 99 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 SCP2P22307 547 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 ADCYAP1R1P41586 468 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 HNRNPH2P55795 449 aaKnown RBP10.61□□□□□ -0.71
VPS53-206ENST00000570359 CUL2Q13617 745 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 PLCB4Q15147 1175 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 MAPK6Q16659 721 aa10.61□□□□□ -0.71
VPS53-206ENST00000570359 CLEC16AQ2KHT3 1053 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms