RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GLULP15104 373 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 TCEA1P23193 301 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 HSPA9P38646 679 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 ERFP50548 548 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 LRRC14Q15048 493 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 KHDC1Q4VXA5 237 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 TTC38Q5R3I4 469 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 DAB2IPQ5VWQ8 1189 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 ENDOVQ8N8Q3 282 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 RASGRP4Q8TDF6 673 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 FBXL5Q9UKA1 691 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 UNC5CO95185 931 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 AFPP02771 609 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 PIK3AP1Q6ZUJ8 805 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 INTS8Q75QN2 995 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 TGFBRAP1Q8WUH2 860 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 NRG4Q8WWG1 115 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 ZNF184Q99676 751 aaPredicted RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 TMEM60Q9H2L4 133 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 CPVLQ9H3G5 476 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 CLK4Q9HAZ1 481 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 GDF3Q9NR23 364 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 TRNAU1APQ9NX07 287 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 COMMD8Q9NX08 183 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 TAB2Q9NYJ8 693 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 RCCD1A6NED2 376 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 SIGLEC16A6NMB1 481 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 FOXD2O60548 495 aaPredicted RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 TRPA1O75762 1119 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 TNFRSF8P28908 595 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 OCRLQ01968 901 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 RBM44Q6ZP01 1051 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 ANKMY2Q8IV38 441 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 GFM2Q969S9 779 aaKnown RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 RXFP1Q9HBX9 757 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 TXLNGQ9NUQ3 528 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 MAGEC2Q9UBF1 373 aaPredicted RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 TTC7AQ9ULT0 858 aaPredicted RBP11.5□□□□□ -0.57
CLK3-226ENST00000569406 MYH8P13535 1937 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 GAKO14976 1311 aa11.5□□□□□ -0.57
CLK3-226ENST00000569406 CFAP69A5D8W1 941 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 POLRMTO00411 1230 aaKnown RBP11.49□□□□□ -0.57
CLK3-226ENST00000569406 BBOX1O75936 387 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 RFC4P35249 363 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 HOXD13P35453 343 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 C16orf72Q14CZ0 275 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 GSTA3Q16772 222 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 TJAP1Q5JTD0 557 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 DDX42Q86XP3 938 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLK3-226ENST00000569406 TMEM47Q9BQJ4 181 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 PCDHA6Q9UN73 950 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 CTNND2Q9UQB3 1225 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 PCDHA8Q9Y5H6 950 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 SCN9AQ15858 1988 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 KRT36O76013 467 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 UAP1Q16222 522 aaPredicted RBP11.49□□□□□ -0.57
CLK3-226ENST00000569406 WDR72Q3MJ13 1102 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 CCDC81Q6ZN84 652 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 C3orf62Q6ZUJ4 267 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 FASTKD5Q7L8L6 764 aaKnown RBP11.49□□□□□ -0.57
CLK3-226ENST00000569406 NLRP9Q7RTR0 991 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 TMC4Q7Z404 712 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 IRGQQ8WZA9 623 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 DGCR14Q96DF8 476 aaKnown RBP11.49□□□□□ -0.57
CLK3-226ENST00000569406 KLHL14Q9P2G3 628 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 ADD3Q9UEY8 706 aaKnown RBP11.49□□□□□ -0.57
CLK3-226ENST00000569406 TELO2Q9Y4R8 837 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 TLL2Q9Y6L7 1015 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 FLT1P17948 1338 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 ANKRD34BA5PLL1 514 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 TCP11X1B4DZS4 312 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 GPC3P51654 580 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 ACAP1Q15027 740 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 ISLR2Q6UXK2 745 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 C16orf86Q6ZW13 317 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 ZBED8Q8IZ13 594 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 STMN2Q93045 179 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 COQ6Q9Y2Z9 468 aa11.49□□□□□ -0.57
CLK3-226ENST00000569406 TSPAN9O75954 239 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 CHRNB1P11230 501 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 TCP1P17987 556 aaKnown RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 SNRNP48Q6IEG0 339 aaKnown RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 AGGF1Q8N302 714 aaeCLIP11.48□□□□□ -0.57
CLK3-226ENST00000569406 HGH1Q9BTY7 390 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 TBC1D10AQ9BXI6 508 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 PARVGQ9HBI0 331 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 MLXIPLQ9NP71 852 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 TIMMDC1Q9NPL8 285 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 ARL2BPQ9Y2Y0 163 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 MOCS3O95396 460 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 KRT75O95678 551 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 COPB2P35606 906 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 ADCY8P40145 1251 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 UBXN1Q04323 297 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 BTKQ06187 659 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 NOP9Q86U38 636 aaKnown RBP11.48□□□□□ -0.57
CLK3-226ENST00000569406 IRF2BP1Q8IU81 584 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 MAPKAPK5Q8IW41 473 aa11.48□□□□□ -0.57
CLK3-226ENST00000569406 CERS5Q8N5B7 392 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms