RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 STK24Q9Y6E0 443 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 A0A087X0B3 334 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PROS1P07225 676 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PLCG1P19174 1290 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PMLP29590 882 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 GLUD2P49448 558 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 NDUFA8P51970 172 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PSMC5P62195 406 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 UBE2HP62256 183 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 CSRP2Q16527 193 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 LONRF3Q496Y0 759 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 TSSK4Q6SA08 328 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 CCDC73Q6ZRK6 1079 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PRR23CQ6ZRP0 262 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 ZNF280BQ86YH2 543 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 FGF14Q92915 247 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 ZNF668Q96K58 619 aaPredicted RBP12.48□□□□□ -0.41
CLN3-226ENST00000567160 INO80BQ9C086 356 aaPredicted RBP12.48□□□□□ -0.41
CLN3-226ENST00000567160 SEMA4GQ9NTN9 838 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 FAM105AQ9NUU6 356 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 DDX19AQ9NUU7 478 aaKnown RBP12.48□□□□□ -0.41
CLN3-226ENST00000567160 WRAP73Q9P2S5 460 aaPredicted RBP12.48□□□□□ -0.41
CLN3-226ENST00000567160 CCDC39Q9UFE4 941 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 CDH7Q9ULB5 785 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 KCNH3Q9ULD8 1083 aa12.48□□□□□ -0.41
CLN3-226ENST00000567160 PIN4Q9Y237 131 aaKnown RBP12.48□□□□□ -0.41
CLN3-226ENST00000567160 TMEM150BA6NC51 233 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 DDX11L8A8MPP1 907 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 ZBTB39O15060 712 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 POLR2DO15514 142 aaKnown RBP12.47□□□□□ -0.41
CLN3-226ENST00000567160 GAS2O43903 313 aaKnown RBP12.47□□□□□ -0.41
CLN3-226ENST00000567160 ZNF862O60290 1169 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 ZNF623O75123 536 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 MYBP10242 640 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 LIG1P18858 919 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 STAT6P42226 847 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 SYKP43405 635 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 PRKCEQ02156 737 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 LPAL2Q16609 132 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 TMEM119Q4V9L6 283 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 HYIQ5T013 277 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 RRAGBQ5VZM2 374 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 PARM1Q6UWI2 310 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 ZNF852Q6ZMS4 543 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 PRR23BQ6ZRT6 265 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 TPRG1Q6ZUI0 275 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 KCNK18Q7Z418 384 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 DHX58Q96C10 678 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 IER2Q9BTL4 223 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 ZSWIM4Q9H7M6 989 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 RXFP1Q9HBX9 757 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLN3-226ENST00000567160 NRBP2Q9NSY0 501 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 SEPT9Q9UHD8 586 aaPredicted RBP12.47□□□□□ -0.41
CLN3-226ENST00000567160 CEP295Q9C0D2 2601 aa12.47□□□□□ -0.41
CLN3-226ENST00000567160 CNTNAP2Q9UHC6 1331 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 E9PMD0 336 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 NRP1O14786 923 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 SLC26A4O43511 780 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 DKC1O60832 514 aaKnown RBP eCLIP12.46□□□□□ -0.41
CLN3-226ENST00000567160 OATP04181 439 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 SPATA31D3P0C874 917 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 CD72P21854 359 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 CREMQ03060 361 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 DHX8Q14562 1220 aaKnown RBP12.46□□□□□ -0.41
CLN3-226ENST00000567160 PLA2G4FQ68DD2 849 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 SPATA31D4Q6ZUB0 917 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 C4orf19Q8IY42 314 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 ST13P5Q8NFI4 369 aaPredicted RBP12.46□□□□□ -0.41
CLN3-226ENST00000567160 PIGOQ8TEQ8 1089 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 LRRC15Q8TF66 581 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 NACC1Q96RE7 527 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 RPP25Q9BUL9 199 aaKnown RBP12.46□□□□□ -0.41
CLN3-226ENST00000567160 HPSEQ9Y251 543 aa12.46□□□□□ -0.41
CLN3-226ENST00000567160 ASPMQ8IZT6 3477 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 FAM237AA0A1B0GTK4 181 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 TGM5O43548 720 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 B4GALT3O60512 393 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 NR1I2O75469 434 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 CSDE1O75534 798 aaKnown RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 DDHD2O94830 711 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 STBD1O95210 358 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 MUTP22033 750 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 TARSP26639 723 aaKnown RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 DNM2P50570 870 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 DSG1Q02413 1049 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 FAM160A1Q05DH4 1040 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 ADCY1Q08828 1119 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 MTAPQ13126 283 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 XKR3Q5GH77 459 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 N4BP2L1Q5TBK1 243 aaPredicted RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 PALB2Q86YC2 1186 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 FMR1NBQ8N0W7 255 aaPredicted RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 IQUBQ8NA54 791 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 CCDC43Q96MW1 224 aaKnown RBP12.45□□□□□ -0.42
CLN3-226ENST00000567160 SH2D3AQ9BRG2 576 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 RSAD1Q9HA92 442 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 SERTAD1Q9UHV2 236 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms