RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 MYADMQ96S97 322 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 CDT1Q9H211 546 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 SMOC2Q9H3U7 446 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 POLD4Q9HCU8 107 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 LARSQ9P2J5 1176 aaKnown RBP16.34■□□□□ 0.21
CLN3-222ENST00000566083 MTRRQ9UBK8 725 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 CACNG4Q9UBN1 327 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 USP20Q9Y2K6 914 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 WDFY4Q6ZS81 3184 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 TOM1L1O75674 476 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 MYBP10242 640 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 PLS3P13797 630 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 KCNE1P15382 129 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 PROZP22891 400 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 CDC25AP30304 524 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 OR1D2P34982 312 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 CLCNKBP51801 687 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 GLRA4Q5JXX5 417 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 ZPBP2Q6X784 338 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 GET4Q7L5D6 327 aaPredicted RBP16.33■□□□□ 0.2
CLN3-222ENST00000566083 FEZF2Q8TBJ5 459 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 MMTAG2Q9BU76 263 aaKnown RBP16.33■□□□□ 0.2
CLN3-222ENST00000566083 RUSC1Q9BVN2 902 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 TARS2Q9BW92 718 aaKnown RBP16.33■□□□□ 0.2
CLN3-222ENST00000566083 CDH7Q9ULB5 785 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 KCNH3Q9ULD8 1083 aa16.33■□□□□ 0.2
CLN3-222ENST00000566083 ZFHX2Q9C0A1 2572 aaPredicted RBP16.33■□□□□ 0.2
CLN3-222ENST00000566083 FAM186AA6NE01 2351 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 PP2D1A8MPX8 630 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 PROB1E7EW31 1015 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 ANHXE9PGG2 379 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 H0Y858 1186 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 SYN3O14994 580 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 RFX1P22670 979 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 GJB2P29033 226 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 ABCD1P33897 745 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 MAPK7Q13164 816 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 ZRSR1Q15695 479 aaKnown RBP16.32■□□□□ 0.2
CLN3-222ENST00000566083 IL17AQ16552 155 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 KYAT1Q16773 422 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 AXDND1Q5T1B0 1012 aaPredicted RBP16.32■□□□□ 0.2
CLN3-222ENST00000566083 MTSS1LQ765P7 747 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 SIX5Q8N196 739 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 CNTN3Q9P232 1028 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 SMC3Q9UQE7 1217 aa16.32■□□□□ 0.2
CLN3-222ENST00000566083 TRIP11Q15643 1979 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 VWA3AA6NCI4 1184 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 H7C4K7 107 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 SLC16A4O15374 487 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 GRASPQ7Z6J2 395 aaPredicted RBP16.31■□□□□ 0.2
CLN3-222ENST00000566083 SLC7A14Q8TBB6 771 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 KCNN1Q92952 543 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 CALML4Q96GE6 196 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 SHDQ96IW2 340 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 SNX27Q96L92 541 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 TSPAN18Q96SJ8 248 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 PLEKHA5Q9HAU0 1116 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 SLC2A4RGQ9NR83 387 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 ODF2LQ9ULJ1 636 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 MAFFQ9ULX9 164 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 POLIQ9UNA4 740 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 CDY1Q9Y6F8 540 aa16.31■□□□□ 0.2
CLN3-222ENST00000566083 STK25O00506 426 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 PODXLO00592 558 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 CLDN3O15551 220 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 PLA2G4BP0C869 781 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 ELF1P32519 619 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 UBA7P41226 1012 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 OSTNP61366 133 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 HTR4Q13639 388 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 NOLC1Q14978 699 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLN3-222ENST00000566083 LARP1BQ659C4 914 aaKnown RBP16.3■□□□□ 0.2
CLN3-222ENST00000566083 CWF19L1Q69YN2 538 aaKnown RBP16.3■□□□□ 0.2
CLN3-222ENST00000566083 SLC8B1Q6J4K2 584 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 TAS1R3Q7RTX0 852 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 KCNK18Q7Z418 384 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 CCDC105Q8IYK2 499 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 CEP120Q8N960 986 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 TMEM161BQ8NDZ6 487 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 ZNF461Q8TAF7 563 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 RSAD2Q8WXG1 361 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 CXCL16Q9H2A7 254 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 CITO14578 2027 aa16.3■□□□□ 0.2
CLN3-222ENST00000566083 SFI1A8K8P3 1242 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 GFRA3O60609 400 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 CFHP08603 1231 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 NPR3P17342 541 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 TKTP29401 623 aaKnown RBP16.29■□□□□ 0.2
CLN3-222ENST00000566083 NBL1P41271 181 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 SLC12A3P55017 1021 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 PABPC1LQ4VXU2 614 aaKnown RBP16.29■□□□□ 0.2
CLN3-222ENST00000566083 PHLDB3Q6NSJ2 640 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 BRAPQ7Z569 592 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 APPL2Q8NEU8 664 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 PHOX2BQ99453 314 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 OXCT2Q9BYC2 517 aaPredicted RBP16.29■□□□□ 0.2
CLN3-222ENST00000566083 VWA8A3KMH1 1905 aa16.29■□□□□ 0.2
CLN3-222ENST00000566083 ABLIM1O14639 778 aa16.28■□□□□ 0.2
CLN3-222ENST00000566083 CCL16O15467 120 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms