RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CTAGE9A4FU28 777 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ACKR2O00590 384 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 KCNK3O14649 394 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 EXTL3O43909 919 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MAFO75444 373 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MOCS3O95396 460 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 THP07101 528 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ADRB2P07550 413 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 UQCRHP07919 91 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 NFICP08651 508 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CLTAP09496 248 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SPATA31D3P0C874 917 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 FGFR1P11362 822 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 UCHL3P15374 230 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 YWHAEP62258 255 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ZBED6P86452 979 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM60Q495X7 471 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 JADE1Q6IE81 842 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TAPT1Q6NXT6 567 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SPATA31D4Q6ZUB0 917 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TOGARAM2Q6ZUX3 1019 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TRAPPC11Q7Z392 1133 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM192Q8IY95 271 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 OR5B17Q8NGF7 314 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 C18orf25Q96B23 403 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 DUSP9Q99956 384 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CALN1Q9BXU9 219 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC113Q9H0I3 377 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SIK2Q9H0K1 926 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 IGFLR1Q9H665 355 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ZWILCHQ9H900 591 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 KIAA1586Q9HCI6 787 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 DPP3Q9NY33 737 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 KCND2Q9NZV8 630 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 NUDT5Q9UKK9 219 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 FNDC3AQ9Y2H6 1198 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PPP2R2CQ9Y2T4 447 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TRPV2Q9Y5S1 764 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC88AQ3V6T2 1871 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ANKRD31Q8N7Z5 1873 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 BCORQ6W2J9 1755 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 COL11A2P13942 1736 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 GOLGA4Q13439 2230 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MFAP3LO75121 409 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ACTN2P35609 894 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 GRIK1P39086 918 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MRPS6P82932 125 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SPIRE1Q08AE8 756 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 BMS1Q14692 1282 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SNX17Q15036 470 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CBWD6Q4V339 395 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CBWD3Q5JTY5 395 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CBWD5Q5RIA9 395 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF618Q5T7W0 954 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 KIAA1524Q8TCG1 905 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 DIS3LQ8TF46 1054 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 IFT81Q8WYA0 676 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SELENOOQ9BVL4 669 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MAK16Q9BXY0 300 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CDT1Q9H211 546 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TRPC7Q9HCX4 862 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ADAM22Q9P0K1 906 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM10Q9UDY6 481 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PCDHB2Q9Y5E7 798 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 WDR90Q96KV7 1748 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ASTN1O14525 1302 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 NFASCO94856 1347 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SMIM23A6NLE4 172 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 GOLGA8CPA6NN73 597 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TTLL13PA6NNM8 815 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 MYO1FO00160 1098 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 FOXN3O00409 490 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PRRG1O14668 218 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 RBP5P82980 135 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 TSPY1Q01534 308 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PPP3CAQ08209 521 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 NME3Q13232 169 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SMAD1Q15797 465 aaKnown RBP5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CYP4A22Q5TCH4 519 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 CENPPQ6IPU0 288 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 DNAJC24Q6P3W2 148 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PLPPR4Q7Z2D5 763 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ERICH1Q86X53 443 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ABRAQ8N0Z2 381 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 APPL2Q8NEU8 664 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 PGBD4Q96DM1 585 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 SEPT10Q9P0V9 454 aa5.83□□□□□ -1.48
VPS13C-209ENST00000560637 ADGRA3Q8IWK6 1321 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 FSD2A1L4K1 749 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 USP27XA6NNY8 438 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 KIF4AO95239 1232 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 SLC4A1P02730 911 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 FERP16591 822 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 ATP4AP20648 1035 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 GTF2H1P32780 548 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 BRCC3P46736 316 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 SURF1Q15526 300 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 IFI16Q16666 785 aaKnown RBP5.82□□□□□ -1.48
VPS13C-209ENST00000560637 FAM171A1Q5VUB5 890 aa5.82□□□□□ -1.48
VPS13C-209ENST00000560637 SLC27A1Q6PCB7 646 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms