RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PEX3P56589 373 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 FMO1Q01740 532 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 CALCOCO2Q13137 446 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 RASA3Q14644 834 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 LACTB2Q53H82 288 aaPredicted RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 TRIM68Q6AZZ1 485 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 SLC9A9Q8IVB4 645 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 CDAN1Q8IWY9 1227 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 XXYLT1Q8NBI6 393 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 GJD4Q96KN9 370 aaPredicted RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 GORASP1Q9BQQ3 440 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 STRA6Q9BX79 667 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■■ 27.8
CUX1-218ENST00000560541 CORO1CQ9ULV4 474 aaPredicted RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 C15orf41Q9Y2V0 281 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 SIX1Q15475 284 aaPredicted RBP12.08□□□□□ -0.48
CUX1-218ENST00000560541 STRIP1Q5VSL9 837 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 SEPT14Q6ZU15 432 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 EXOC3L1Q86VI1 746 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 GDAP1Q8TB36 358 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 CD101Q93033 1021 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 PASKQ96RG2 1323 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 GLIS2Q9BZE0 524 aaPredicted RBP12.08□□□□□ -0.48
CUX1-218ENST00000560541 FGFR1OP2Q9NVK5 253 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ZHX2Q9Y6X8 837 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 SCN9AQ15858 1988 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 PPIP5K2O43314 1243 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ATP6V1G2O95670 118 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 RARGP13631 454 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 HSPA6P17066 643 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ALDH1B1P30837 517 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 MXRA7P84157 204 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 KRT17Q04695 432 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 MPP3Q13368 585 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 XRCC4Q13426 336 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TNIP1Q15025 636 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 AOC3Q16853 763 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 SGO2Q562F6 1265 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 CC2D2BQ6DHV5 1058 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 HAUS6Q7Z4H7 955 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 PIGWQ7Z7B1 504 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ART4Q93070 314 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 AGBL1Q96MI9 1066 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TSPAN18Q96SJ8 248 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 WNT8AQ9H1J5 351 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ARHGEF10LQ9HCE6 1279 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 KCNK9Q9NPC2 374 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 KCNH7Q9NS40 1196 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 CHST7Q9NS84 486 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 HOMER2Q9NSB8 354 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TBK1Q9UHD2 729 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TCP11X1B4DZS4 312 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TOM1O60784 492 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 ATP4AP20648 1035 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 RFX1P22670 979 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 HADHBP55084 474 aaKnown RBP12.08□□□□□ -0.48
CUX1-218ENST00000560541 ELF3P78545 371 aaPredicted RBP12.08□□□□□ -0.48
CUX1-218ENST00000560541 SLMAPQ14BN4 828 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 CNGA2Q16280 664 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 MIGA2Q7L4E1 593 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 LDHDQ86WU2 507 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 COL23A1Q86Y22 540 aaPredicted RBP12.08□□□□□ -0.48
CUX1-218ENST00000560541 ACCSQ96QU6 501 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 RPS6KC1Q96S38 1066 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 PI4K2AQ9BTU6 479 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TAOK3Q9H2K8 898 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 PARP2Q9UGN5 583 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 AGAP1Q9UPQ3 857 aa12.08□□□□□ -0.48
CUX1-218ENST00000560541 TMEM120BA0PK00 339 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 GH1P01241 217 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CYP11B1P15538 503 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CA8P35219 290 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CUL3Q13618 768 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 TRPM8Q7Z2W7 1104 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 FAM71AQ8IYT1 594 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CCDC63Q8NA47 563 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 ARHGEF2Q92974 986 aaKnown RBP12.07□□□□□ -0.48
CUX1-218ENST00000560541 HERPUD2Q9BSE4 406 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 UBE2OQ9C0C9 1292 aaKnown RBP12.07□□□□□ -0.48
CUX1-218ENST00000560541 TMEM206Q9H813 350 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 AAASQ9NRG9 546 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 KCND2Q9NZV8 630 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 COL20A1Q9P218 1284 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CNOT7Q9UIV1 285 aaKnown RBP12.07□□□□□ -0.48
CUX1-218ENST00000560541 ASAP2O43150 1006 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 ALAS1P13196 640 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 KRT5P13647 590 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 RARRES1P49788 294 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 SOX10P56693 466 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 CLUL1Q15846 466 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 KYNUQ16719 465 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 PLA2G4FQ68DD2 849 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 KCNV2Q8TDN2 545 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 TAS1R2Q8TE23 839 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 TEKT4Q8WW24 435 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 HEMGNQ9BXL5 484 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 OSBPL1AQ9BXW6 950 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 ANAPC7Q9UJX3 599 aa12.07□□□□□ -0.48
CUX1-218ENST00000560541 SCAF8Q9UPN6 1271 aaKnown RBP12.07□□□□□ -0.48
CUX1-218ENST00000560541 SPDYE5A6NIY4 337 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms