RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LLPHQ9BRT6 129 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 RAB34Q9BZG1 259 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 FOXQ1Q9C009 403 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 BHMT2Q9H2M3 363 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 GDE1Q9NZC3 331 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 DNMT3BQ9UBC3 853 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 KCNG1Q9UIX4 513 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 NOL7Q9UMY1 257 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 MRPS17Q9Y2R5 130 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 MRPS23Q9Y3D9 190 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 CDY1Q9Y6F8 540 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 DOCK8Q8NF50 2099 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 SMIM28A0A1B0GU29 152 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 CCDC169A6NNP5 214 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 H7C4K7 107 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF197O14709 1029 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 KINO60870 393 aaKnown RBP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 LRG1P02750 347 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 TRAPPC10P48553 1259 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 FXR2P51116 673 aaKnown RBP eCLIP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 GUCY1B3Q02153 619 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 UBXN2BQ14CS0 331 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 GLRA4Q5JXX5 417 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 TTC38Q5R3I4 469 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 ZBTB41Q5SVQ8 909 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 NT5DC1Q5TFE4 455 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 KIAA2013Q8IYS2 634 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 ATRIPQ8WXE1 791 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 TCHPQ9BT92 498 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 DDX23Q9BUQ8 820 aaKnown RBP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 CXCL16Q9H2A7 254 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 TMEM134Q9H6X4 195 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 AVENQ9NQS1 362 aaPredicted RBP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 SPATA6Q9NWH7 488 aaPredicted RBP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 LRWD1Q9UFC0 647 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 FBXO4Q9UKT5 387 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 LIMCH1Q9UPQ0 1083 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 KIAA1024Q9UPX6 916 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 DNM3Q9UQ16 869 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 USP20Q9Y2K6 914 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 RBM19Q9Y4C8 960 aaKnown RBP10.07□□□□□ -0.8
HDDC3-204ENST00000559834 ARID2Q68CP9 1835 aa10.07□□□□□ -0.8
HDDC3-204ENST00000559834 ARHGEF37A1IGU5 675 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 PRRG1O14668 218 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 SYN3O14994 580 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 ECI2O75521 394 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 RHOP08100 348 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 GLULP15104 373 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 TKTP29401 623 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 RPL9P32969 192 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 GRM5P41594 1212 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 PEX3P56589 373 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 HMGN5P82970 282 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 DMP1Q13316 513 aaPredicted RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 SLC8B1Q6J4K2 584 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 ALKAL1Q6UXT8 129 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF852Q6ZMS4 543 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 NPAS3Q8IXF0 933 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 FAM184AQ8NB25 1140 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 FBXO18Q8NFZ0 1043 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 SECISBP2LQ93073 1101 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 MCRS1Q96EZ8 462 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 DRC1Q96MC2 740 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 ACAP3Q96P50 834 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 ACO2Q99798 780 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 KXD1Q9BQD3 176 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 KIFC3Q9BVG8 833 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 MRPL4Q9BYD3 311 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 C17orf75Q9HAS0 396 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 POLD4Q9HCU8 107 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 DDX19AQ9NUU7 478 aaKnown RBP10.06□□□□□ -0.8
HDDC3-204ENST00000559834 HCFC1R1Q9NWW0 138 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 MAFFQ9ULX9 164 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 NUB1Q9Y5A7 615 aa10.06□□□□□ -0.8
HDDC3-204ENST00000559834 PODXLO00592 558 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 MAN2B1O00754 1011 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 MICAL2O94851 1124 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ABLIM3O94929 683 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 MCF2P10911 925 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ATF2P15336 505 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 BRCC3P46736 316 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 NPTX2P47972 431 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ARPP19P56211 112 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 OSTNP61366 133 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 CSTF1Q05048 431 aaKnown RBP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 PUM1Q14671 1186 aaKnown RBP eCLIP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ECM1Q16610 540 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF568Q3ZCX4 644 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 XKR4Q5GH76 650 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 VARS2Q5ST30 1063 aaKnown RBP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 CYP4A22Q5TCH4 519 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 KRT79Q5XKE5 535 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 TPGS2Q68CL5 300 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 IQCEQ6IPM2 695 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 CD300LGQ6UXG3 332 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 DGLUCYQ7Z3D6 616 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 ELMOD1Q8N336 334 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 GPR161Q8N6U8 529 aaKnown RBP10.05□□□□□ -0.8
HDDC3-204ENST00000559834 APPL2Q8NEU8 664 aa10.05□□□□□ -0.8
HDDC3-204ENST00000559834 SNX29Q8TEQ0 813 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms