RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 SIT1Q9Y3P8 196 aa14.42□□□□□ -0.1
TPM1-220ENST00000559556 CCL16O15467 120 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 DCNP07585 359 aaKnown RBP14.41□□□□□ -0.1
TPM1-220ENST00000559556 OR1D2P34982 312 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 FXR2P51116 673 aaKnown RBP eCLIP14.41□□□□□ -0.1
TPM1-220ENST00000559556 STARD6P59095 220 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 ECM1Q16610 540 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 UPP1Q16831 310 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 GLRA4Q5JXX5 417 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 TTC38Q5R3I4 469 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 AXDND1Q5T1B0 1012 aaPredicted RBP14.41□□□□□ -0.1
TPM1-220ENST00000559556 NT5DC1Q5TFE4 455 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 ATF7IP2Q5U623 682 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 DDX27Q96GQ7 796 aaKnown RBP14.41□□□□□ -0.1
TPM1-220ENST00000559556 C8orf76Q96K31 380 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 UROC1Q96N76 676 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 RPP25Q9BUL9 199 aaKnown RBP14.41□□□□□ -0.1
TPM1-220ENST00000559556 KIFC3Q9BVG8 833 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 PHLPP2Q6ZVD8 1323 aa14.41□□□□□ -0.1
TPM1-220ENST00000559556 MAP1BP46821 2468 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 EIF5BO60841 1220 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 LMNAP02545 664 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 GLULP15104 373 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 LIG1P18858 919 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 TRAPPC10P48553 1259 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 CLCNKBP51801 687 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 ZNF174Q15697 407 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 SPECC1Q5M775 1068 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 ZC3H14Q6PJT7 736 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 CD300LGQ6UXG3 332 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 APBB1IPQ7Z5R6 666 aaPredicted RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 C4orf32Q8N8J7 132 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 C3orf58Q8NDZ4 430 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 ST13P5Q8NFI4 369 aaPredicted RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 FBXO18Q8NFZ0 1043 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 ITFG1Q8TB96 612 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 SHDQ96IW2 340 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 LLPHQ9BRT6 129 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 DDX23Q9BUQ8 820 aaKnown RBP14.4□□□□□ -0.1
TPM1-220ENST00000559556 FOXQ1Q9C009 403 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 BHMT2Q9H2M3 363 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 KCNH3Q9ULD8 1083 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 TNFSF13BQ9Y275 285 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 BACE2Q9Y5Z0 518 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 CDY1Q9Y6F8 540 aa14.4□□□□□ -0.1
TPM1-220ENST00000559556 PTPRDP23468 1912 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 KMT2BQ9UMN6 2715 aaPredicted RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 TRAPPC3O43617 180 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 B3GAT3O94766 335 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 NEFLP07196 543 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 IGFBP6P24592 240 aaPredicted RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 TKTP29401 623 aaKnown RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 CCT6AP40227 531 aaKnown RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 GPC5P78333 572 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 PABPC1LQ4VXU2 614 aaKnown RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 XKR4Q5GH76 650 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 RSPO2Q6UXX9 243 aaPredicted RBP14.39□□□□□ -0.11
TPM1-220ENST00000559556 ANKS3Q6ZW76 656 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 ERMP1Q7Z2K6 904 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 C1orf210Q8IVY1 113 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 CCDC83Q8IWF9 413 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 NPAS3Q8IXF0 933 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 IGSF22Q8N9C0 903 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 GOLGA2P5Q9HBQ8 144 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 HCFC1R1Q9NWW0 138 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 LRWD1Q9UFC0 647 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 POLIQ9UNA4 740 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 LIMCH1Q9UPQ0 1083 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 R4GN57 208 aa14.39□□□□□ -0.11
TPM1-220ENST00000559556 KANSL1LA0AUZ9 987 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 K7ERI5 159 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 SP9P0CG40 484 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 GRM5P41594 1212 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 ID4P47928 161 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 PRKCQQ04759 706 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 SOX4Q06945 474 aaPredicted RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 PDIA5Q14554 519 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 MLF2Q15773 248 aaPredicted RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 ALKAL1Q6UXT8 129 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 DAW1Q8N136 415 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 CEP120Q8N960 986 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 ACO2Q99798 780 aaKnown RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 KXD1Q9BQD3 176 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 CDT1Q9H211 546 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 AVENQ9NQS1 362 aaPredicted RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 TOPORSQ9NS56 1045 aaPredicted RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 DDX19AQ9NUU7 478 aaKnown RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 ARHGAP28Q9P2N2 729 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 DNMT3BQ9UBC3 853 aaKnown RBP14.38□□□□□ -0.11
TPM1-220ENST00000559556 KIAA1024Q9UPX6 916 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 STK24Q9Y6E0 443 aa14.38□□□□□ -0.11
TPM1-220ENST00000559556 NUP205Q92621 2012 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 SMIM28A0A1B0GU29 152 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 ARHGEF37A1IGU5 675 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 NPTX2P47972 431 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 HMGN5P82970 282 aaKnown RBP14.37□□□□□ -0.11
TPM1-220ENST00000559556 PFKPQ01813 784 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 ROR1Q01973 937 aa14.37□□□□□ -0.11
TPM1-220ENST00000559556 SNW1Q13573 536 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms