RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FBLP22087 321 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 PCSK1P29120 753 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 ECHS1P30084 290 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 IL13P35225 146 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TM4SF4P48230 202 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PRIM2P49643 509 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 AGFG1P52594 562 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 RRADP55042 308 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 NRG3P56975 720 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 ZNF280AP59817 542 aaPredicted RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 RAB1AP62820 205 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 MAP3K12Q12852 859 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 NOGQ13253 232 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TOP3AQ13472 1001 aaPredicted RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 SNAPC2Q13487 334 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 SAFB2Q14151 953 aaKnown RBP eCLIP2.06□□□□□ -2.08
USP3-209ENST00000558925 CCDC142Q17RM4 750 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 MST1LQ2TV78 715 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 ANO6Q4KMQ2 910 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 CCDC157Q569K6 752 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 FAM83BQ5T0W9 1011 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 RNF220Q5VTB9 566 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 AGBL4Q5VU57 503 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TRMT10BQ6PF06 316 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 Q6ZSN1 163 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TSHZ1Q6ZSZ6 1077 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 GPR155Q7Z3F1 870 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 SRGAP1Q7Z6B7 1085 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 LIX1LQ8IVB5 337 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 DRC7Q8IY82 874 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 FAM43AQ8N2R8 423 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 DCBLD1Q8N8Z6 715 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 GPR156Q8NFN8 814 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.06□□□□□ -2.08
USP3-209ENST00000558925 IL17DQ8TAD2 202 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 CCHCR1Q8TD31 782 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 CACTINQ8WUQ7 758 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 STON2Q8WXE9 905 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 LRTOMTQ8WZ04 291 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 HDAC10Q969S8 669 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TMX3Q96JJ7 454 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 CLPTM1LQ96KA5 538 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 MRGPRX4Q96LA9 322 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 WDR92Q96MX6 357 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 CLIC6Q96NY7 704 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PDCD2LQ9BRP1 358 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 TMEM168Q9H0V1 697 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PPCSQ9HAB8 311 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 NGRNQ9NPE2 291 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 KLHL11Q9NVR0 708 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 ING3Q9NXR8 418 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 SAE1Q9UBE0 346 aaPredicted RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 Q9UFV3 132 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PUF60Q9UHX1 559 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 CPA4Q9UI42 421 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 DMTF1Q9Y222 760 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 RUVBL1Q9Y265 456 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 CFAP69A5D8W1 941 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 CAPN8A6NHC0 703 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 FAM171A2A8MVW0 826 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 F8W8V4 182 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 H3BUI4 141 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 IFRD1O00458 451 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 GOLIM4O00461 696 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 CREB3O43889 395 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 NBNO60934 754 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 EIF3JO75822 258 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 ALDH1A2O94788 518 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 KLHL18O94889 574 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 HMGCRP04035 888 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 HRGP04196 525 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 SBK3P0C264 359 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 NPR1P16066 1061 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 SREBF1P36956 1147 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 ETV4P43268 484 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 HTR3AP46098 478 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 HK3P52790 923 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 AK2P54819 239 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 KRTAP10-6P60371 365 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 FAM193AP78312 1265 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 NKX6-1P78426 367 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 CDC42EP1Q00587 391 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TLE1Q04724 770 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 STK3Q13188 491 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 MORC3Q14149 939 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 DHX8Q14562 1220 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 PLS1Q14651 629 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 EIF4HQ15056 248 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 PCOLCEQ15113 449 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 VPS72Q15906 364 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TBR1Q16650 682 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 GRAMD1BQ3KR37 738 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TUBB8Q3ZCM7 444 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 KHDC1Q4VXA5 237 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 CCDC178Q5BJE1 867 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 DARS2Q6PI48 645 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 C1orf228Q6PIY5 440 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 DPP8Q6V1X1 898 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 TOGARAM2Q6ZUX3 1019 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 MAEAQ7L5Y9 396 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms