RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 NAPGQ99747 312 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-233ENST00000557529 SYT11Q9BT88 431 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 ASB7Q9H672 318 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 TRIM10Q9UDY6 481 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 NAGPAQ9UK23 515 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 INTUQ9ULD6 942 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 NENFQ9UMX5 172 aa13.45□□□□□ -0.26
SHMT2-233ENST00000557529 BTNL10A8MVZ5 291 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 DDX3XO00571 662 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 URI1O94763 535 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 ABL1P00519 1130 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 PGK1P00558 417 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 TMEM191BP0C7N4 346 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 STAG3L1P0CL83 205 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 ELNP15502 786 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 TNFAIP3P21580 790 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 EIF4BP23588 611 aaKnown RBP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 USP8P40818 1118 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 PRMT2P55345 433 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 HIC1Q14526 733 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 MAP3K21Q5TCX8 1036 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 NOTUMQ6P988 496 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 TRAPPC11Q7Z392 1133 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 RSPH3Q86UC2 560 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 CDR2LQ86X02 465 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 CD302Q8IX05 232 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 PCSK9Q8NBP7 692 aaKnown RBP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 TRIM58Q8NG06 486 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 SLC30A5Q8TAD4 765 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 RAET1EQ8TD07 263 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 DHX38Q92620 1227 aaKnown RBP13.44□□□□□ -0.26
SHMT2-233ENST00000557529 KAT5Q92993 513 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 TATDN2Q93075 761 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 CPB2Q96IY4 423 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 ALS2CR12Q96Q35 445 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 AGPAT1Q99943 283 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 PI4K2AQ9BTU6 479 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 GTF2IRD1Q9UHL9 959 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 GINS2Q9Y248 185 aa13.44□□□□□ -0.26
SHMT2-233ENST00000557529 UQCRHLA0A096LP55 91 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 MACROD2A1Z1Q3 448 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 FANCGO15287 622 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 FKTNO75072 461 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 UQCRHP07919 91 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CXCL8P10145 99 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CCND3P30281 292 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-233ENST00000557529 GTF2F1P35269 517 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHMT2-233ENST00000557529 GRM5P41594 1212 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CRYBB1P53674 252 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-233ENST00000557529 BPIFB4P59827 614 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 OSTNP61366 133 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 TFAMQ00059 246 aaKnown RBP13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CAP1Q01518 475 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 TMEM62Q0P6H9 643 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 TRPC3Q13507 836 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 SGSM1Q2NKQ1 1148 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 NBPF20Q3BBV1 942 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 SLC27A1Q6PCB7 646 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CXCL17Q6UXB2 119 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 SESTD1Q86VW0 696 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 NT5DC4Q86YG4 428 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 CEP120Q8N960 986 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 KLHDC9Q8NEP7 349 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 NOX5Q96PH1 765 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 OSMRQ99650 979 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 MTMR12Q9C0I1 747 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 SAGE1Q9NXZ1 904 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 TFR2Q9UP52 801 aa13.43□□□□□ -0.26
SHMT2-233ENST00000557529 ANO9A1A5B4 782 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 M0QZ92 97 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 CABYRO75952 493 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 ASS1P00966 412 aaKnown RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 H2AFZP0C0S5 128 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 PDE6CP51160 858 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 NOP14P78316 857 aaKnown RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 ZNF200P98182 395 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 CUL2Q13617 745 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 SNX17Q15036 470 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 IFI16Q16666 785 aaKnown RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 H2AFVQ71UI9 128 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 GLYCTKQ8IVS8 523 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 LNX1Q8TBB1 728 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 U2AF1L4Q8WU68 220 aaKnown RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 PPP1R13LQ8WUF5 828 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 TAF4BQ92750 862 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 FAM84AQ96KN4 292 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 ACAP3Q96P50 834 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 CCDC94Q9BW85 323 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.42□□□□□ -0.266e-6■□□□□ 11
SHMT2-233ENST00000557529 DDX20Q9UHI6 824 aaKnown RBP13.42□□□□□ -0.26
SHMT2-233ENST00000557529 DUSP10Q9Y6W6 482 aa13.42□□□□□ -0.26
SHMT2-233ENST00000557529 MROH7Q68CQ1 1323 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 LACTBL1A8MY62 500 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 CYP26A1O43174 497 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 SLU7O95391 586 aaKnown RBP13.41□□□□□ -0.26
SHMT2-233ENST00000557529 KRT5P13647 590 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 CYP11B1P15538 503 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 HOXA11P31270 313 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-233ENST00000557529 KCNA10Q16322 511 aa13.41□□□□□ -0.26
SHMT2-233ENST00000557529 CCSAPQ6IQ19 270 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms