RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ECI2O75521 394 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 RECQL4O94761 1208 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 RHOP08100 348 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 GCFC2P16383 781 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 OR1D2P34982 312 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 ADCY1Q08828 1119 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 NCBP1Q09161 790 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 RAB33AQ14088 237 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 GRM2Q14416 872 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 EARS2Q5JPH6 523 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 PPM1JQ5JR12 505 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 TANGO2Q6ICL3 276 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 PPP4R3AQ6IN85 833 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 ZNF852Q6ZMS4 543 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 OXER1Q8TDS5 423 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 DNASE1L2Q92874 299 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 LARP6Q9BRS8 491 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 CHRDQ9H2X0 955 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 PDZD7Q9H5P4 517 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 GPRC5CQ9NQ84 441 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 GJB4Q9NTQ9 266 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 MTRRQ9UBK8 725 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 DAXXQ9UER7 740 aaPredicted RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 NDRG2Q9UN36 371 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 MRPS23Q9Y3D9 190 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 CDY1Q9Y6F8 540 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 NCANO14594 1321 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 PI4KAP42356 2102 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 A0A087WWV3 80 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 LRRIQ4A6NIV6 560 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 SLC30A4O14863 429 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 TBX3O15119 743 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 NCAM2O15394 837 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 USO1O60763 962 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 DTNBO60941 627 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 DGAT1O75907 488 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 SLITRK3O94933 977 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 EDN1P05305 212 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 FGFR3P22607 806 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 RARRES1P49788 294 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 PRSS36Q5K4E3 855 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 CDCA2Q69YH5 1023 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 LAIR1Q6GTX8 287 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 GALNT17Q6IS24 598 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 CD300LGQ6UXG3 332 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 PIK3AP1Q6ZUJ8 805 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 TPH2Q8IWU9 490 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 NETO1Q8TDF5 533 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 TCEAL4Q96EI5 215 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 DDX27Q96GQ7 796 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 NELL2Q99435 816 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 EIF2AK1Q9BQI3 630 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 FAM126AQ9BYI3 521 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 SNTG2Q9NY99 539 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 USP20Q9Y2K6 914 aa9.04□□□□□ -0.96
CCDC88C-214ENST00000557507 THADAQ6YHU6 1953 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 ASCC3Q8N3C0 2202 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PKD1L2Q7Z442 2459 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 TMEM189-UBE2V1I3L0A0 370 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 I3L4J1 428 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 CPLX1O14810 134 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 GDF9O60383 454 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 LYPLA2O95372 231 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 THP07101 528 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 TKTP29401 623 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 CCR2P41597 374 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 SATB1Q01826 763 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 DMWDQ09019 674 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 ELAVL2Q12926 359 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 STK3Q13188 491 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 SRSF5Q13243 272 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 UVSSAQ2YD98 709 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 GLRA4Q5JXX5 417 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 EEF1DP3Q658K8 133 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PDXDC1Q6P996 788 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PRR23CQ6ZRP0 262 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PRR23BQ6ZRT6 265 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 NOSTRINQ8IVI9 506 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 ABCA7Q8IZY2 2146 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 FAM177A1Q8N128 213 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 C3orf58Q8NDZ4 430 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PIGOQ8TEQ8 1089 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 BSNDQ8WZ55 320 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 ELSPBP1Q96BH3 223 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PRIMPOLQ96LW4 560 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 HSD17B14Q9BPX1 270 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 GOLGA2P5Q9HBQ8 144 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 AVENQ9NQS1 362 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 ANKEF1Q9NU02 776 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PRMT7Q9NVM4 692 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 GDE1Q9NZC3 331 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 RALYQ9UKM9 306 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 RAB23Q9ULC3 237 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 MRPS17Q9Y2R5 130 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 PTPRDP23468 1912 aa9.03□□□□□ -0.96
CCDC88C-214ENST00000557507 SCN1AP35498 2009 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 ARHGEF37A1IGU5 675 aa9.02□□□□□ -0.97
CCDC88C-214ENST00000557507 WDR27A2RRH5 827 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms