RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 DDX1Q92499 740 aaKnown RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 DHX38Q92620 1227 aaKnown RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 FAM212AQ96EL1 285 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 TRIM6Q9C030 488 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 SENP1Q9P0U3 644 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 PSTPIP1O43586 416 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 GH2P01242 217 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 RPSAP08865 295 aaKnown RBP17.34■□□□□ 0.37
SHMT2-231ENST00000557433 ARP10275 920 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 NPR1P16066 1061 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 SCP2P22307 547 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 HMGB2P26583 209 aaKnown RBP17.34■□□□□ 0.37
SHMT2-231ENST00000557433 NCKAP1LP55160 1127 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 KYNUQ16719 465 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 PPP1R2P3Q6NXS1 205 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 TDRPQ86YL5 185 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 AGGF1Q8N302 714 aaeCLIP17.34■□□□□ 0.37
SHMT2-231ENST00000557433 KAT5Q92993 513 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 TTC25Q96NG3 672 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 TMEM237Q96Q45 408 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 EURLQ9NYK6 297 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 RPL26L1Q9UNX3 145 aaKnown RBP17.34■□□□□ 0.37
SHMT2-231ENST00000557433 NEU2Q9Y3R4 380 aa17.34■□□□□ 0.37
SHMT2-231ENST00000557433 FAM47DPA6NHR8 397 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 KRT16P08779 473 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 SLURP2P0DP57 97 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 GCNT1Q02742 428 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 AOC3Q16853 763 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 ZNF365Q70YC5 407 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 FAM160B2Q86V87 743 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 FBXL13Q8NEE6 735 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 CFAP61Q8NHU2 1237 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 PLEKHO2Q8TD55 490 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 BTBD6Q96KE9 485 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 CFAP57Q96MR6 1250 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 HERC5Q9UII4 1024 aaKnown RBP17.33■□□□□ 0.37
SHMT2-231ENST00000557433 ANAPC7Q9UJX3 599 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 NAALADL1Q9UQQ1 740 aa17.33■□□□□ 0.37
SHMT2-231ENST00000557433 GRIN3BO60391 1043 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 ATP2A2P16615 1042 aaKnown RBP17.33■□□□□ 0.36
SHMT2-231ENST00000557433 TAC1P20366 129 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 RARRES1P49788 294 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 YARSP54577 528 aaKnown RBP17.33■□□□□ 0.36
SHMT2-231ENST00000557433 BPIFB4P59827 614 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 INPP5DQ92835 1189 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 POP1Q99575 1024 aaKnown RBP17.33■□□□□ 0.36
SHMT2-231ENST00000557433 PITPNM3Q9BZ71 974 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 LRMDAQ9H2I8 198 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 CHST7Q9NS84 486 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 LRRC4BQ9NT99 713 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 SMG5Q9UPR3 1016 aaKnown RBP17.33■□□□□ 0.36
SHMT2-231ENST00000557433 TMX2Q9Y320 296 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 L3MBTL1Q9Y468 752 aa17.33■□□□□ 0.36
SHMT2-231ENST00000557433 NRXN2Q9P2S2 1712 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 PRPF4O43172 522 aaKnown RBP eCLIP17.32■□□□□ 0.361e-8■■■□□ 17.5
SHMT2-231ENST00000557433 DCTN3O75935 186 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 CREB1P16220 341 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 IBSPP21815 317 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 ALDH3A1P30838 453 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 CETN2P41208 172 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 MKRN4PQ13434 485 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 MPP2Q14168 576 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 RASA2Q15283 850 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 ZKSCAN8Q15776 578 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 SNRNP35Q16560 246 aaKnown RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 ZCCHC9Q8N567 271 aaKnown RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 PARD3BQ8TEW8 1205 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 SH3TC2Q8TF17 1288 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 DDX27Q96GQ7 796 aaKnown RBP17.32■□□□□ 0.36
SHMT2-231ENST00000557433 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 SLC5A4Q9NY91 659 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 USH1CQ9Y6N9 552 aa17.32■□□□□ 0.36
SHMT2-231ENST00000557433 A0A1W2PRG0 241 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 UNGP13051 313 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 QARSP47897 775 aaKnown RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 RASSF2P50749 326 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 POLGP54098 1239 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 CACNB3P54284 484 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 KLF1Q13351 362 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 SNX1Q13596 522 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 MCOLN2Q8IZK6 566 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 GDAP1Q8TB36 358 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 THOC1Q96FV9 657 aaKnown RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 RAB20Q9NX57 234 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 CHORDC1Q9UHD1 332 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 HNRNPCL1O60812 293 aaKnown RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 PROSCO94903 275 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 ADRB2P07550 413 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 TAL1P17542 331 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 RBM5P52756 815 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 SPARCL1Q14515 664 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 CMPK2Q5EBM0 449 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 CGB2Q6NT52 195 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 TRIM72Q6ZMU5 477 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 BZW1Q7L1Q6 419 aaKnown RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 ECHDC2Q86YB7 292 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 SRRM1Q8IYB3 904 aaKnown RBP17.31■□□□□ 0.36
SHMT2-231ENST00000557433 KATNAL2Q8IYT4 538 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 TEX9Q8N6V9 391 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 MAML1Q92585 1016 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms