RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TMEM87AQ8NBN3 555 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 MSTO1Q9BUK6 570 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 C1QTNF1Q9BXJ1 281 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 SCAND2PQ9GZW5 306 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-219ENST00000555563 SLC38A7Q9NVC3 462 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 TMEM189-UBE2V1I3L0A0 370 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 ACTN4O43707 911 aaKnown RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 CNPP09543 421 aaKnown RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 IGFBP6P24592 240 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 CASP1P29466 404 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 AMPD3Q01432 767 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 ALCAMQ13740 583 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 ENOX2Q16206 610 aaKnown RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 UPP1Q16831 310 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 L1TD1Q5T7N2 865 aaKnown RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 KIAA0319Q5VV43 1072 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 ADALQ6DHV7 355 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 KIAA1841Q6NSI8 718 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 ANKRD54Q6NXT1 300 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 GRAMD1CQ8IYS0 662 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 C3orf58Q8NDZ4 430 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 CASP10Q92851 521 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 HPS3Q969F9 1004 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 C18orf25Q96B23 403 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 FAM122AQ96E09 287 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 UROC1Q96N76 676 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 KLHL5Q96PQ7 755 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 C7orf25Q9BPX7 421 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 PYM1Q9BRP8 204 aaKnown RBP14.96□□□□□ -0.01
SHMT2-219ENST00000555563 EMILIN2Q9BXX0 1053 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 BLZF1Q9H2G9 400 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 GDPD2Q9HCC8 539 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 CHST7Q9NS84 486 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 EXOC7Q9UPT5 735 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 FAM50BQ9Y247 325 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 STYXL1Q9Y6J8 313 aa14.96□□□□□ -0.01
SHMT2-219ENST00000555563 PLXNA3P51805 1871 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-219ENST00000555563 A0A1B0GVL5 298 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 TTC26A0AVF1 554 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 B3GAT3O94766 335 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 EPCAMP16422 314 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 CMA1P23946 247 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 PLA2G5P39877 138 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 AFMP43652 599 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 NUCB2P80303 420 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 PPP2R3AQ06190 1150 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SPAG1Q07617 926 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 KYAT1Q16773 422 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 USP41Q3LFD5 358 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 RTP2Q5QGT7 225 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SLFN12LQ6IEE8 588 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SYCE2Q6PIF2 218 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 CD300LGQ6UXG3 332 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 CEP57L1Q8IYX8 460 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 GLIS3Q8NEA6 775 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SLC22A17Q8WUG5 538 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 ACCSQ96QU6 501 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 RPF1Q9H9Y2 349 aaKnown RBP14.95□□□□□ -0.02
SHMT2-219ENST00000555563 PLEKHA5Q9HAU0 1116 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 TUBGCP4Q9UGJ1 667 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SERTAD1Q9UHV2 236 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 CPSF3Q9UKF6 684 aaKnown RBP14.95□□□□□ -0.02
SHMT2-219ENST00000555563 HPSEQ9Y251 543 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 SSX2IPQ9Y2D8 614 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 USP15Q9Y4E8 981 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-219ENST00000555563 PCDHB13Q9Y5F0 798 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 VWA8A3KMH1 1905 aa14.95□□□□□ -0.02
SHMT2-219ENST00000555563 PODXLO00592 558 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 TEX28O15482 410 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 PRPF6O94906 941 aaKnown RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 SLFN14P0C7P3 912 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 KLRC2P26717 231 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 ADSSP30520 456 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 CLCN4P51793 760 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 ELAVL2Q12926 359 aaKnown RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 SMAD2Q15796 467 aaKnown RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 TPRNQ4KMQ1 711 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 FAM171A1Q5VUB5 890 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 DCLRE1AQ6PJP8 1040 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 PRSS55Q6UWB4 352 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 UNC13DQ70J99 1090 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 PPFIBP1Q86W92 1011 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 TMEM130Q8N3G9 435 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 RIN2Q8WYP3 895 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 POMGNT1Q8WZA1 660 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 KIF12Q96FN5 646 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 DDX27Q96GQ7 796 aaKnown RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 TTPALQ9BTX7 342 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 APOL5Q9BWW9 433 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 RXFP1Q9HBX9 757 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 AGO2Q9UKV8 859 aaKnown RBP14.94□□□□□ -0.02
SHMT2-219ENST00000555563 ANK1P16157 1881 aa14.94□□□□□ -0.02
SHMT2-219ENST00000555563 FAM237AA0A1B0GTK4 181 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 A0A1W2PQ27 194 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 A0A1W2PQ64 194 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 A0A1W2PQD8 194 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 LACTBL1A8MY62 500 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 I3L4J1 428 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 ADH1AP07327 375 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms