RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TRIM5Q9C035 493 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 XPO4Q9C0E2 1151 aaKnown RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 HAPLN2Q9GZV7 340 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 PCIF1Q9H4Z3 704 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 THAP9Q9H5L6 903 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 ZNF576Q9H609 170 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 RBAKQ9NYW8 714 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 IFNKQ9P0W0 207 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 CNTN3Q9P232 1028 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 CPSF3Q9UKF6 684 aaKnown RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 MTUS1Q9ULD2 1270 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 TRAF3IP3Q9Y228 551 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 A0A1B0GTH6 734 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 BICDL2A1A5D9 508 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ZNF233A6NK53 670 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TULP1O00294 542 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-218ENST00000555213 FAM189A1O60320 539 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 NR3C1P04150 777 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 RB1P06400 928 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 KCNE1P15382 129 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 BMPR1AP36894 532 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TNFSF9P41273 254 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ERVK-21P61565 698 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 PLCB2Q00722 1185 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 LRRC63Q05C16 580 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TUSC3Q13454 348 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 MYBPC2Q14324 1141 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ENOX2Q16206 610 aaKnown RBP11.83□□□□□ -0.52
SHMT2-218ENST00000555213 EDRF1Q3B7T1 1238 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TCP11X2Q5H9J9 407 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 GLRA4Q5JXX5 417 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ZBTB41Q5SVQ8 909 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 USP37Q86T82 979 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 BRSK2Q8IWQ3 736 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM192Q8IY95 271 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 COLGALT1Q8NBJ5 622 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 FBXO22Q8NEZ5 403 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ARNTL2Q8WYA1 636 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 FAM212AQ96EL1 285 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 EEF2KMTQ96G04 330 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 UROC1Q96N76 676 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM175Q9BSA9 504 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 ASB7Q9H672 318 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 DMAC2Q9NW81 257 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 FRMD4BQ9Y2L6 1034 aa11.83□□□□□ -0.52
SHMT2-218ENST00000555213 SMIM28A0A1B0GU29 152 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 TTC26A0AVF1 554 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 GOLGA8IPA6NC78 632 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 GOLGA8JA6NMD2 632 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 PTGESO14684 152 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 CLIC2O15247 247 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 TEX33O43247 280 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 NR2F2P24468 414 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 CDC25BP30305 580 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 PBX1P40424 430 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 BCAR1P56945 870 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 UBASH3AP57075 661 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 DSC1Q08554 894 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM132DQ14C87 1099 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 KRT31Q15323 416 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 SURF1Q15526 300 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 SNRNP35Q16560 246 aaKnown RBP11.82□□□□□ -0.52
SHMT2-218ENST00000555213 NFIL3Q16649 462 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 SLC10A6Q3KNW5 377 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 EPC2Q52LR7 807 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 KCNT2Q6UVM3 1135 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 FILIP1Q7Z7B0 1213 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 NT5DC4Q86YG4 428 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 SLC9A9Q8IVB4 645 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 CSGALNACT2Q8N6G5 542 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM174Q8WUU8 243 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 KIF12Q96FN5 646 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM169Q96HH4 297 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 C17orf80Q9BSJ5 609 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 RTN4Q9NQC3 1192 aaKnown RBP11.82□□□□□ -0.52
SHMT2-218ENST00000555213 STK39Q9UEW8 545 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 UBQLN1Q9UMX0 589 aaKnown RBP11.82□□□□□ -0.52
SHMT2-218ENST00000555213 DERAQ9Y315 318 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 C2CD2Q9Y426 696 aa11.82□□□□□ -0.52
SHMT2-218ENST00000555213 GBF1Q92538 1859 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 LACTBL1A8MY62 500 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 KCNJ18B7U540 433 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 C5orf67F2Z3F1 127 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 CETN3O15182 167 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 ARHGEF15O94989 841 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 OR1G1P47890 313 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 AFF1P51825 1210 aaKnown RBP11.81□□□□□ -0.52
SHMT2-218ENST00000555213 MCCD1P59942 119 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-218ENST00000555213 TPM4P67936 248 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 KRT17Q04695 432 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 KCNJ12Q14500 433 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 PTPN21Q16825 1174 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 XKR4Q5GH76 650 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 CEP135Q66GS9 1140 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 ALKAL1Q6UXT8 129 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 ZNF280BQ86YH2 543 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 CBWD2Q8IUF1 395 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 GSTCDQ8NEC7 633 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 BEST2Q8NFU1 509 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 DDX27Q96GQ7 796 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms