RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 SPAG1Q07617 926 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 KCNJ12Q14500 433 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 SCN5AQ14524 2016 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 C1orf220Q5T0J3 134 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 JADE1Q6IE81 842 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 TMCO2Q7Z6W1 182 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-215ENST00000554997 CREBRFQ8IUR6 639 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 WDR49Q8IV35 697 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 TRIM59Q8IWR1 403 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 URGCPQ8TCY9 931 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 PLEKHO2Q8TD55 490 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 ZNF516Q92618 1163 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 SLC35C1Q96A29 364 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 RNPC3Q96LT9 517 aaKnown RBP11.05□□□□□ -0.64
SYNE2-215ENST00000554997 PPP1R10Q96QC0 940 aaKnown RBP11.05□□□□□ -0.64
SYNE2-215ENST00000554997 RAD9AQ99638 391 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 ZBED2Q9BTP6 218 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 TANC1Q9C0D5 1861 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 SLC38A7Q9NVC3 462 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 INTS13Q9NVM9 706 aa11.05□□□□□ -0.64
SYNE2-215ENST00000554997 LIMA1Q9UHB6 759 aaKnown RBP11.05□□□□□ -0.64
SYNE2-215ENST00000554997 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 LRRIQ3A6PVS8 624 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TBKBP1A7MCY6 615 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TULP1O00294 542 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 XPOTO43592 962 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 POMCP01189 267 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 C4BPAP04003 597 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 DLATP10515 647 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 SCNN1GP51170 649 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TMEM132DQ14C87 1099 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 NAB2Q15742 525 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 FAM117BQ6P1L5 589 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 CMTR2Q8IYT2 770 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 KIF12Q96FN5 646 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 CNOT6LQ96LI5 555 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 RPS6KC1Q96S38 1066 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 CGRRF1Q99675 332 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TUBGCP2Q9BSJ2 902 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 MRPL9Q9BYD2 267 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 RBSNQ9H1K0 784 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 PRO3102Q9H379 93 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 RC3H2Q9HBD1 1191 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TBC1D13Q9NVG8 400 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 UBQLN1Q9UMX0 589 aaKnown RBP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 INPP5FQ9Y2H2 1132 aa11.04□□□□□ -0.64
SYNE2-215ENST00000554997 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.04□□□□□ -0.64
SYNE2-215ENST00000554997 TET1Q8NFU7 2136 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 LTBP2Q14767 1821 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 PMM2O15305 246 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 DDHD2O94830 711 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 TNNC2P02585 160 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 ALDH2P05091 517 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 NFICP08651 508 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 RPL9P32969 192 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 MTIF2P46199 727 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 TFAMQ00059 246 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 RNASELQ05823 741 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 PPP3CAQ08209 521 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 DSC1Q08554 894 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 KCNH2Q12809 1159 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 GRIK3Q13003 919 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 HSP90AA4PQ58FG1 418 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 PRPF38BQ5VTL8 546 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 C15orf39Q6ZRI6 1047 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 SV2AQ7L0J3 742 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 ZNF280BQ86YH2 543 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 EFCAB13Q8IY85 973 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 TDHQ8IZJ6 230 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 RNF214Q8ND24 703 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 ANKRD20A12PQ8NF67 263 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 BEST2Q8NFU1 509 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 OR5B17Q8NGF7 314 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 C18orf25Q96B23 403 aaPredicted RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 DDX27Q96GQ7 796 aaKnown RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 ANKRD36BP1Q96IX9 119 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 FAM193BQ96PV7 902 aaPredicted RBP11.03□□□□□ -0.64
SYNE2-215ENST00000554997 YME1L1Q96TA2 773 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 TMEM8AQ9HCN3 771 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 DPP3Q9NY33 737 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 PLAGL2Q9UPG8 496 aa11.03□□□□□ -0.64
SYNE2-215ENST00000554997 CARNS1A5YM72 827 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 P4HA2O15460 535 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TLL1O43897 1013 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 CST3P01034 146 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TRIM49P0CI25 452 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TRIM49CP0CI26 452 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 ATP1A3P13637 1013 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 LRPAP1P30533 357 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 GCLMP48507 274 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 GATMP50440 423 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 RBP5P82980 135 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 SOX4Q06945 474 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TUSC3Q13454 348 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 BTG3Q14201 252 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-215ENST00000554997 KRT31Q15323 416 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 MAN2A1Q16706 1144 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 ZACNQ401N2 412 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 VWA3BQ502W6 1294 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms