RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 EIF5BO60841 1220 aaKnown RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 HSPA6P17066 643 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 GTF2H3Q13889 308 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 UBXN2BQ14CS0 331 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 KHDC1Q4VXA5 237 aaKnown RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 THEMIS2Q5TEJ8 643 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 UBE3BQ7Z3V4 1068 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 PLXDC1Q8IUK5 500 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 IL17DQ8TAD2 202 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 HPS3Q969F9 1004 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 AIFM3Q96NN9 605 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 DMRTA2Q96SC8 542 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 VRK1Q99986 396 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 C11orf54Q9H0W9 315 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 NMRK2Q9NPI5 230 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 MAN1C1Q9NR34 630 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 CALCOCO1Q9P1Z2 691 aa6.54□□□□□ -1.36
SCFD1-211ENST00000554437 EIF2B4Q9UI10 523 aaKnown RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 TCRBV7S2A1N4TA0A589 114 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 PLSCR1O15162 318 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 AMHP03971 560 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 U2AF1L5P0DN76 240 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 APOBEC3AP31941 199 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 U2AF1Q01081 240 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 NHLH2Q02577 135 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 TLE1Q04724 770 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 ZNF267Q14586 743 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 ATAT1Q5SQI0 421 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 FAM102BQ5T8I3 360 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 CXorf57Q6NSI4 855 aaKnown RBP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 DCBLD1Q8N8Z6 715 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 C3orf20Q8ND61 904 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 RGMAQ96B86 450 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 CLIP3Q96DZ5 547 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 FAM193BQ96PV7 902 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-211ENST00000554437 SLC12A5Q9H2X9 1139 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 PARPBPQ9NWS1 579 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 SORCS3Q9UPU3 1222 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 POLHQ9Y253 713 aa6.53□□□□□ -1.36
SCFD1-211ENST00000554437 LRRC14BA6NHZ5 514 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 DRGXA6NNA5 263 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 C1QTNF3-AMACRE9PGA6 284 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 LEFTY2O00292 366 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 GRM6O15303 877 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 PRPF3O43395 683 aaKnown RBP6.52□□□□□ -1.37
SCFD1-211ENST00000554437 RECQL4O94761 1208 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 FTLP02792 175 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-211ENST00000554437 LPOP22079 712 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-211ENST00000554437 SMARCA1P28370 1054 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 CHN2P52757 468 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 CCDC157Q569K6 752 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 DACT2Q5SW24 774 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 RNF207Q6ZRF8 634 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 MED25Q71SY5 747 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 EPM2AIP1Q7L775 607 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-211ENST00000554437 SPRED1Q7Z699 444 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 SYT12Q8IV01 421 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 TSR2Q969E8 191 aaKnown RBP6.52□□□□□ -1.37
SCFD1-211ENST00000554437 PLEKHG4BQ96PX9 1271 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 KMT5AQ9NQR1 393 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 PCDHA3Q9Y5H8 950 aa6.52□□□□□ -1.37
SCFD1-211ENST00000554437 SLC16A6O15403 523 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 FAM20BO75063 409 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 SCAF4O95104 1147 aaKnown RBP6.51□□□□□ -1.37
SCFD1-211ENST00000554437 CD1AP06126 327 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 MTHFD1P11586 935 aaKnown RBP6.51□□□□□ -1.37
SCFD1-211ENST00000554437 ALAS1P13196 640 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 INSRRP14616 1297 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 MALP21145 153 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 MAP2K6P52564 334 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 PTTG1IPP53801 180 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 RNASE9P60153 205 aaKnown RBP6.51□□□□□ -1.37
SCFD1-211ENST00000554437 SNAPC2Q13487 334 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 PABPC1LQ4VXU2 614 aaKnown RBP6.51□□□□□ -1.37
SCFD1-211ENST00000554437 RABL3Q5HYI8 236 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 FMNL3Q8IVF7 1028 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 TCEAL8Q8IYN2 117 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 SLC35G2Q8TBE7 412 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 CPT1CQ8TCG5 803 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 C1GALT1C1Q96EU7 318 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 DCLRE1CQ96SD1 692 aaKnown RBP6.51□□□□□ -1.37
SCFD1-211ENST00000554437 GSTO2Q9H4Y5 243 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 ANLNQ9NQW6 1124 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 FBXO34Q9NWN3 711 aa6.51□□□□□ -1.37
SCFD1-211ENST00000554437 ARIH2O95376 493 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 ITGB1P05556 798 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 SBK3P0C264 359 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 SLC6A2P23975 617 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 NOGQ13253 232 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 TOB2Q14106 344 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-211ENST00000554437 MLC1Q15049 377 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 MINDY4Q4G0A6 757 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 NXNQ6DKJ4 435 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 WDR75Q8IWA0 830 aaKnown RBP6.5□□□□□ -1.37
SCFD1-211ENST00000554437 MYO1HQ8N1T3 1032 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 CAMKK1Q8N5S9 505 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 MAGEB6Q8N7X4 407 aa6.5□□□□□ -1.37
SCFD1-211ENST00000554437 NLGN4YQ8NFZ3 816 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-211ENST00000554437 DIS3LQ8TF46 1054 aaKnown RBP6.5□□□□□ -1.37
SCFD1-211ENST00000554437 REXO4Q9GZR2 422 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms