RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MXD4Q14582 209 aaPredicted RBP14.33□□□□□ -0.12
VPS29-211ENST00000553128 PPP2R5DQ14738 602 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 INF2Q27J81 1249 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 CD300LGQ6UXG3 332 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 VITQ6UXI7 678 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 Q6ZS52 159 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 HAS1Q92839 578 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 CORO1BQ9BR76 489 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 TRMT61BQ9BVS5 477 aaKnown RBP14.33□□□□□ -0.12
VPS29-211ENST00000553128 SNTG2Q9NY99 539 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 ARID2Q68CP9 1835 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 ZFYVE26Q68DK2 2539 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 C1QTNF9BB2RNN3 333 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 I3L4J1 428 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 PROS1P07225 676 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 C1QTNF9P0C862 333 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 IFNAR1P17181 557 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 FGFR3P22607 806 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 TKTP29401 623 aaKnown RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 ARL2P36404 184 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 VIPR2P41587 438 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 CCT2P78371 535 aaKnown RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 POU5F1BQ06416 359 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 AASDHQ4L235 1098 aaPredicted RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 MOXD1Q6UVY6 613 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 BLIDQ8IZY5 108 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 DDX1Q92499 740 aaKnown RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 AIFM3Q96NN9 605 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 ASB16Q96NS5 453 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 IER2Q9BTL4 223 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 ZFP14Q9HCL3 533 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 AVENQ9NQS1 362 aaPredicted RBP14.32□□□□□ -0.12
VPS29-211ENST00000553128 SH3GLB2Q9NR46 395 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 USP20Q9Y2K6 914 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 TICRRQ7Z2Z1 1910 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 ZMYM2Q9UBW7 1377 aa14.32□□□□□ -0.12
VPS29-211ENST00000553128 RALGAPA1Q6GYQ0 2036 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 A0A087WWV3 80 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 WDR27A2RRH5 827 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 ARNTLO00327 626 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 AXIN1O15169 862 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 DKC1O60832 514 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS29-211ENST00000553128 RECQL4O94761 1208 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 THP07101 528 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 PTPN2P17706 415 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 SOX9P48436 509 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 TFDP1Q14186 410 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 EPHA7Q15375 998 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 NCAPH2Q6IBW4 605 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 OTUD6AQ7L8S5 288 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 LONP2Q86WA8 852 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 SPEM1Q8N4L4 309 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 IRF7Q92985 503 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 DDX27Q96GQ7 796 aaKnown RBP14.31□□□□□ -0.12
VPS29-211ENST00000553128 C22orf23Q9BZE7 217 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 ARRDC1-AS1Q9H2J1 176 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 SMOC1Q9H4F8 434 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 ZMIZ1Q9ULJ6 1067 aa14.31□□□□□ -0.12
VPS29-211ENST00000553128 ARHGEF37A1IGU5 675 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 MOSPD3O75425 235 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 GJA1P17302 382 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 PSMC3P17980 439 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 LIMK1P53667 647 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 ROR1Q01973 937 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 SPIRE1Q08AE8 756 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 ELAVL2Q12926 359 aaKnown RBP14.3□□□□□ -0.12
VPS29-211ENST00000553128 PTGDRQ13258 359 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 PDXDC1Q6P996 788 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 NOSTRINQ8IVI9 506 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 HS6ST3Q8IZP7 471 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 C3orf58Q8NDZ4 430 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 RSPRY1Q96DX4 576 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 FAM20AQ96MK3 541 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 NFKBIZQ9BYH8 718 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 ZSWIM4Q9H7M6 989 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 GPRC5CQ9NQ84 441 aa14.3□□□□□ -0.12
VPS29-211ENST00000553128 TBX3O15119 743 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 SLITRK3O94933 977 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 KCNK5O95279 499 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 PAPSS2O95340 614 aaPredicted RBP14.29□□□□□ -0.12
VPS29-211ENST00000553128 SEC24AO95486 1093 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 LRG1P02750 347 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 EDN1P05305 212 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 CNR2P34972 360 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 BRCC3P46736 316 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 CLCNKBP51801 687 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 KRT32Q14532 448 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 GLRA4Q5JXX5 417 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 STPG1Q5TH74 334 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 TXNDC11Q6PKC3 985 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 CEP68Q76N32 757 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 RTL10Q7L3V2 364 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 TPH2Q8IWU9 490 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 DAGLBQ8NCG7 672 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 SMARCD2Q92925 531 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 POLR3FQ9H1D9 316 aaPredicted RBP14.29□□□□□ -0.12
VPS29-211ENST00000553128 PDZD7Q9H5P4 517 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 GOLGA2P5Q9HBQ8 144 aa14.29□□□□□ -0.12
VPS29-211ENST00000553128 TRPV5Q9NQA5 729 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms