RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 LENG1Q96BZ8 264 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 APOBEC3GQ9HC16 384 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 CHST7Q9NS84 486 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 NRBP2Q9NSY0 501 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 KAT6AQ92794 2004 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 BRCA2P51587 3418 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SYNJ2BP-COX16A0A087WUM0 186 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM191BP0C7N4 346 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MAPTP10636 758 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 GTF2H1P32780 548 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 IRAK1P51617 712 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ALDH5A1P51649 535 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MAGOHP61326 146 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 RPL7AP62424 266 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SGO2Q562F6 1265 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ABHD15Q6UXT9 468 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MTMR14Q8NCE2 650 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 C1orf131Q8NDD1 294 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MCPH1Q8NEM0 835 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 NEK9Q8TD19 979 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 HELQQ8TDG4 1101 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ATP8B4Q8TF62 1192 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 IMPG2Q9BZV3 1241 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SEMA4AQ9H3S1 761 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM8AQ9HCN3 771 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 KCNK9Q9NPC2 374 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MED4Q9NPJ6 270 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ANKEF1Q9NU02 776 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 COX16Q9P0S2 106 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SNCAIPQ9Y6H5 919 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 FZD9O00144 591 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 DDX3YO15523 660 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 RTN2O75298 545 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MYZAPP0CAP1 466 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ZSCAN5DPP0CG00 497 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 RARAP10276 462 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ETS1P14921 441 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 CTNNA2P26232 953 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ADCY8P40145 1251 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 RGS7P49802 495 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 NOP14P78316 857 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 NCOA4Q13772 614 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 CAPSQ13938 189 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 WDR72Q3MJ13 1102 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF568Q3ZCX4 644 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TTC27Q6P3X3 843 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 EMBQ6PCB8 327 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 JAMLQ86YT9 394 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 MAP4K3Q8IVH8 894 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 C7orf31Q8N865 590 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 RBBP8NLQ8NC74 664 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 UBA3Q8TBC4 463 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 OPTNQ96CV9 577 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 GPRASP2Q96D09 838 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 C9orf72Q96LT7 481 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 IWS1Q96ST2 819 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 FMO2Q99518 471 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 HERPUD2Q9BSE4 406 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SUCLA2Q9P2R7 463 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 HES2Q9Y543 173 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 C19orf81C9J6K1 198 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 TLR3O15455 904 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 TUBBP07437 444 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 CXCL8P10145 99 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PRLRP16471 622 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 NR1D1P20393 614 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 RPS12P25398 132 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 NUMBP49757 651 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 NRLP54845 237 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 C10orf76Q5T2E6 689 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 EFCAB12Q6NXP0 572 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SCYL2Q6P3W7 929 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 ZC3H3Q8IXZ2 948 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 MICALL1Q8N3F8 863 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SEPT1Q8WYJ6 367 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SLC10A4Q96EP9 437 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 CDCA5Q96FF9 252 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 LPIN3Q9BQK8 851 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 DDX23Q9BUQ8 820 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 UBXN6Q9BZV1 441 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 RNPEPQ9H4A4 650 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PNMA2Q9UL42 364 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 R3HDM2Q9Y2K5 976 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 RPTORQ8N122 1335 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 ARFGEF1Q9Y6D6 1849 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 VGLL3A8MV65 326 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SPATA31C2B4DYI2 1134 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 H0YHG0 523 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 ERLIN2O94905 339 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PRKCBP05771 671 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 RALAP11233 206 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 TAS2R40P59535 323 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 TUBB4BP68371 445 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 LACTBP83111 547 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PPFIA1Q13136 1202 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SLC29A2Q14542 456 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 UAP1Q16222 522 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 LONRF1Q17RB8 773 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF662Q6ZS27 426 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms