RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SP7Q8TDD2 431 aaPredicted RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 RSPH1Q8WYR4 309 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 C18orf25Q96B23 403 aaPredicted RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 BORCS6Q96GS4 357 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 POP1Q99575 1024 aaKnown RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 PBX4Q9BYU1 374 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 YBX2Q9Y2T7 364 aaKnown RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 MRPL42Q9Y6G3 142 aaKnown RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 TRIOBPQ9H2D6 2365 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 DDHD2O94830 711 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 FGFR1OPO95684 399 aaKnown RBP22.98■■□□□ 1.27
VPS29-206ENST00000549578 ZNF445P59923 1031 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 TMEM132DQ14C87 1099 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 NAB2Q15742 525 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 CCDC40Q4G0X9 1142 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 FNBP1Q96RU3 617 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 BPIFA3Q9BQP9 254 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 CACNG4Q9UBN1 327 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 TUBGCP4Q9UGJ1 667 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 PCDHA11Q9Y5I1 949 aa22.98■■□□□ 1.27
VPS29-206ENST00000549578 A0A1W2PPC1 479 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 CA3P07451 260 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 KRT13P13646 458 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 DLG4P78352 724 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 TFAMQ00059 246 aaKnown RBP22.97■■□□□ 1.27
VPS29-206ENST00000549578 SOX4Q06945 474 aaPredicted RBP22.97■■□□□ 1.27
VPS29-206ENST00000549578 BFSP1Q12934 665 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 INTS8Q75QN2 995 aaKnown RBP22.97■■□□□ 1.27
VPS29-206ENST00000549578 IRF2BP1Q8IU81 584 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 FIBCD1Q8N539 461 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 PARD3BQ8TEW8 1205 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 TSPY26PQ9H489 355 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 CWH43Q9H720 699 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 NRDE2Q9H7Z3 1164 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 GOLGA2P5Q9HBQ8 144 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 SAMSN1Q9NSI8 373 aaKnown RBP22.97■■□□□ 1.27
VPS29-206ENST00000549578 DNAJB4Q9UDY4 337 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 C2CD2Q9Y426 696 aa22.97■■□□□ 1.27
VPS29-206ENST00000549578 LRRIQ3A6PVS8 624 aaPredicted RBP22.96■■□□□ 1.27
VPS29-206ENST00000549578 ZC3H11AO75152 810 aaKnown RBP eCLIP22.96■■□□□ 1.27
VPS29-206ENST00000549578 ARHGEF15O94989 841 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 TRIM49P0CI25 452 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 TRIM49CP0CI26 452 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 VAMP7P51809 220 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 GUCY2FP51841 1108 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 NCAPHQ15003 741 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 SURF1Q15526 300 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 ZBTB6Q15916 424 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 DHX40Q8IX18 779 aaKnown RBP22.96■■□□□ 1.27
VPS29-206ENST00000549578 CNOT6LQ96LI5 555 aaKnown RBP22.96■■□□□ 1.27
VPS29-206ENST00000549578 FAM193BQ96PV7 902 aaPredicted RBP22.96■■□□□ 1.27
VPS29-206ENST00000549578 CGRRF1Q99675 332 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 THAP9Q9H5L6 903 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 CBX8Q9HC52 389 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 ARMCX3Q9UH62 379 aaPredicted RBP22.96■■□□□ 1.27
VPS29-206ENST00000549578 DERAQ9Y315 318 aa22.96■■□□□ 1.27
VPS29-206ENST00000549578 CASTOR2A6NHX0 329 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 TNNI1P19237 187 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 DSC1Q08554 894 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 TUSC3Q13454 348 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 C1orf220Q5T0J3 134 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 SPOUT1Q5T280 376 aaKnown RBP22.95■■□□□ 1.26
VPS29-206ENST00000549578 FRMD5Q7Z6J6 570 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 CREBRFQ8IUR6 639 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 OR5B17Q8NGF7 314 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 TMC2Q8TDI7 906 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 SLC38A7Q9NVC3 462 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 FANCLQ9NW38 375 aa22.95■■□□□ 1.26
VPS29-206ENST00000549578 UBQLN1Q9UMX0 589 aaKnown RBP22.95■■□□□ 1.26
VPS29-206ENST00000549578 LINC01553A4QN01 128 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 GNA14O95837 355 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 PBX3P40426 434 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 IQCB1Q15051 598 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 RAB30Q15771 203 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 DCAF17Q5H9S7 520 aaPredicted RBP22.94■■□□□ 1.26
VPS29-206ENST00000549578 WDR49Q8IV35 697 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 COLGALT2Q8IYK4 626 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 RABGGTAQ92696 567 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 PAAF1Q9BRP4 392 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 MTMR12Q9C0I1 747 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 NKX2-4Q9H2Z4 354 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 METTL14Q9HCE5 456 aaKnown RBP22.94■■□□□ 1.26
VPS29-206ENST00000549578 INTS13Q9NVM9 706 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 MSRAQ9UJ68 235 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 KIAA1671Q9BY89 1806 aa22.94■■□□□ 1.26
VPS29-206ENST00000549578 IKBKBO14920 756 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 TMEM191BP0C7N4 346 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 LINC00271P0C7V0 271 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 SMAD3P84022 425 aaKnown RBP22.93■■□□□ 1.26
VPS29-206ENST00000549578 LRIT3Q3SXY7 679 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 TCERG1LQ5VWI1 586 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 SPRED2Q7Z698 418 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 NT5DC4Q86YG4 428 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 BEST2Q8NFU1 509 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 ZNF516Q92618 1163 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 TSPAN18Q96SJ8 248 aa22.93■■□□□ 1.26
VPS29-206ENST00000549578 XPOTO43592 962 aaKnown RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 CAVIN2O95810 425 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 MARSP56192 900 aaKnown RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 CLDN10P78369 228 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms