RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FNDC3AQ9Y2H6 1198 aaKnown RBP17.27■□□□□ 0.35
CUX1-213ENST00000549414 MAFGO15525 162 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 PPP1R37O75864 691 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 CYP2B6P20813 491 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 GTF2H1P32780 548 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 LONRF1Q17RB8 773 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 TRIM68Q6AZZ1 485 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 ARMCX2Q7L311 632 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 IRF2BP1Q8IU81 584 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 SPATA20Q8TB22 786 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 ZNF507Q8TCN5 953 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 GPRASP2Q96D09 838 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 C18orf8Q96DM3 657 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 IKZF4Q9H2S9 585 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 PXMP2Q9NR77 195 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 GGT7Q9UJ14 662 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 MYBL1P10243 752 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 RPS12P25398 132 aaKnown RBP17.26■□□□□ 0.35
CUX1-213ENST00000549414 BRD2P25440 801 aaKnown RBP17.26■□□□□ 0.35
CUX1-213ENST00000549414 MORC4Q8TE76 937 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 ATG4AQ8WYN0 398 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 DHX35Q9H5Z1 703 aaKnown RBP17.26■□□□□ 0.35
CUX1-213ENST00000549414 DYNC1LI2O43237 492 aaPredicted RBP17.26■□□□□ 0.35
CUX1-213ENST00000549414 HUS1O60921 280 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 PPP1R11O60927 126 aaPredicted RBP17.26■□□□□ 0.35
CUX1-213ENST00000549414 GLI1P08151 1106 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 PCGF5Q86SE9 256 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 SLC47A2Q86VL8 602 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 ARHGAP24Q8N264 748 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 TLR10Q9BXR5 811 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 SIK3Q9Y2K2 1263 aa17.26■□□□□ 0.35
CUX1-213ENST00000549414 TOM1L1O75674 476 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 SASH3O75995 380 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 SLC4A1P02730 911 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 KRT7P08729 469 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 ITGA4P13612 1032 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 BCAR1P56945 870 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 MIIPQ5JXC2 388 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 CYP4A22Q5TCH4 519 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 LRRC55Q6ZSA7 311 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 PPM1NQ8N819 430 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 ATL2Q8NHH9 583 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 TRAF3IP3Q9Y228 551 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 CREB3O43889 395 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 GRIN3BO60391 1043 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 C9orf131Q5VYM1 1079 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 GPAT2Q6NUI2 795 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 EFCAB12Q6NXP0 572 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 AMIGO3Q86WK7 504 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 ARL8AQ96BM9 186 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 ERP44Q9BS26 406 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 OSBPL8Q9BZF1 889 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 GPBP1L1Q9HC44 474 aaPredicted RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 G3BP2Q9UN86 482 aaKnown RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 EXTL3O43909 919 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 CLCN3P51790 818 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 KYNUQ16719 465 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 WDR93Q6P2C0 686 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 EPM2AIP1Q7L775 607 aaPredicted RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 BEST2Q8NFU1 509 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 CFAP61Q8NHU2 1237 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 CCT6BQ92526 530 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 FAM49BQ9NUQ9 324 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 DDNO94850 711 aaPredicted RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 MXD4Q14582 209 aaPredicted RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 SV2AQ7L0J3 742 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 FASTKD5Q7L8L6 764 aaKnown RBP17.25■□□□□ 0.35
CUX1-213ENST00000549414 RAB3IL1Q8TBN0 382 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 MICAL1Q8TDZ2 1067 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 KCNMB3Q9NPA1 279 aa17.25■□□□□ 0.35
CUX1-213ENST00000549414 ASB14A6NK59 587 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 BAG2O95816 211 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 VIL1P09327 827 aaKnown RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 PGM5Q15124 567 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 RWDD4Q6NW29 188 aaKnown RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 FAM83AQ86UY5 434 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 METTL23Q86XA0 190 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 KCTD17Q8N5Z5 321 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 ACAP3Q96P50 834 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 TXNDC9O14530 226 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 RPSAP08865 295 aaKnown RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 PDGFRBP09619 1106 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 SNCBQ16143 134 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 MEA1Q16626 185 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 P3H1Q32P28 736 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 ATF7IP2Q5U623 682 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 GABPB2Q8TAK5 448 aaPredicted RBP17.24■□□□□ 0.35
CUX1-213ENST00000549414 MKL1Q969V6 931 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 MTFR1LQ9H019 292 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 SMARCAD1Q9H4L7 1026 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 A0A0G2JND7 137 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 A0A1B0GUA9 196 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 GOLGA8RI6L899 631 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 GIPC1O14908 333 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 CYP11B1P15538 503 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 CBWD6Q4V339 395 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 CBWD3Q5JTY5 395 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 CBWD5Q5RIA9 395 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 PCNX4Q63HM2 1172 aa17.24■□□□□ 0.35
CUX1-213ENST00000549414 TADA2BQ86TJ2 420 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms