RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ZNF658Q5TYW1 1059 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 KIAA0319Q5VV43 1072 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 PDXDC2PQ6P474 469 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 SARM1Q6SZW1 724 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 LUZP1Q86V48 1076 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 CCDC65Q8IXS2 484 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 DRC7Q8IY82 874 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ABI1Q8IZP0 508 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 LRRC43Q8N309 656 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 AOPEPQ8N6M6 819 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 SPATA20Q8TB22 786 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ETNPPLQ8TBG4 499 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 AUTS2Q8WXX7 1259 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 RAD54LQ92698 747 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 HAS1Q92839 578 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 C7orf25Q9BPX7 421 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 POLR3CQ9BUI4 534 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 TRIM5Q9C035 493 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ATP6V0A4Q9HBG4 840 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 JADE2Q9NQC1 790 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 DZANK1Q9NVP4 752 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 KBTBD4Q9NVX7 518 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 USP18Q9UMW8 372 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 LZTS1Q9Y250 596 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 MYH7BA7E2Y1 1941 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 A0A087X0B3 334 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PVALEFA0A1B0GWK0 134 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 BICDL2A1A5D9 508 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 DCDC2BA2VCK2 349 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PP2D1A8MPX8 630 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 FAM86B1E9PN63 330 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PSMA7O14818 248 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 MSH4O15457 936 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 MAN1A2O60476 641 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 RPS6KA5O75582 802 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 KRT18P05783 430 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 TPM2P07951 284 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 FAM86B2P0C5J1 330 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 SP9P0CG40 484 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 INSRRP14616 1297 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 TIMP2P16035 220 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 RPA1P27694 616 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 CDC25AP30304 524 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 SFNP31947 248 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 ATXN1P54253 815 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PLCB3Q01970 1234 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 SPAG1Q07617 926 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PPP2R5CQ13362 524 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 MTMR1Q13613 665 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 IQCB1Q15051 598 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 EPHA7Q15375 998 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 PTPRNQ16849 979 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 FILIP1LQ4L180 1135 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM119Q4V9L6 283 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 ISM2Q6H9L7 571 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNT2Q6UVM3 1135 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 C11orf57Q6ZUT1 292 aaPredicted RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 UNC13DQ70J99 1090 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 OTOP3Q7RTS5 596 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 RDM1Q8NG50 284 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 ENOX1Q8TC92 643 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 NOC3LQ8WTT2 800 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 RSAD2Q8WXG1 361 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 ERCC4Q92889 916 aaPredicted RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 SLC5A5Q92911 643 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 GPRASP2Q96D09 838 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 CELF4Q9BZC1 486 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 CWH43Q9H720 699 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNK12Q9HB15 430 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 C1orf112Q9NSG2 853 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 EVA1BQ9NVM1 165 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 SPG21Q9NZD8 308 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 USTQ9Y2C2 406 aa7.8□□□□□ -1.16
DEPDC4-208ENST00000549341 FRMPD4Q14CM0 1322 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 IGLV3-22A0A075B6J6 115 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 KRBA1A5PL33 1030 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 IPO5O00410 1097 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 EDIL3O43854 480 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 RHOBTB3O94955 611 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SERPINC1P01008 464 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 RPLP2P05387 115 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SSBP05455 408 aaKnown RBP eCLIP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 PLA2G4BP0C869 781 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 JAK3P52333 1124 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 GUCA2AQ02747 115 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 LMNB2Q03252 620 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 DMWDQ09019 674 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 PAK1Q13153 545 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 CUL4BQ13620 913 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 PLCB4Q15147 1175 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SPATA1Q5VX52 437 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SLC24A5Q71RS6 500 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 MIER3Q7Z3K6 550 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 GRAMD1CQ8IYS0 662 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 MRPL43Q8N983 215 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 GIMAP8Q8ND71 665 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM40Q8WWA1 233 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SEPT1Q8WYJ6 367 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 PDLIM2Q96JY6 352 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms