RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 CCL16O15467 120 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 DCNP07585 359 aaKnown RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 LIG1P18858 919 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 CCT6AP40227 531 aaKnown RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 GPC5P78333 572 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 HMGN5P82970 282 aaKnown RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 PFKPQ01813 784 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 GUCY1B3Q02153 619 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 PRKCQQ04759 706 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 XKR4Q5GH76 650 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 TTC38Q5R3I4 469 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 RSPO2Q6UXX9 243 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 C1orf210Q8IVY1 113 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 DDX27Q96GQ7 796 aaKnown RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 BORCS6Q96GS4 357 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 DDX23Q9BUQ8 820 aaKnown RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 OSBPL6Q9BZF3 934 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 RAB34Q9BZG1 259 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 BHMT2Q9H2M3 363 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 AVENQ9NQS1 362 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 TOPORSQ9NS56 1045 aaPredicted RBP14.13□□□□□ -0.15
PTCH1-218ENST00000548945 SLC38A7Q9NVC3 462 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 USP20Q9Y2K6 914 aa14.13□□□□□ -0.15
PTCH1-218ENST00000548945 DNAH14Q0VDD8 3507 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 SMIM28A0A1B0GU29 152 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 KANSL1LA0AUZ9 987 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 GRM5P41594 1212 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 MAGEA9P43362 315 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 ID4P47928 161 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 CLCNKBP51801 687 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 YARSP54577 528 aaKnown RBP14.12□□□□□ -0.15
PTCH1-218ENST00000548945 NTHL1P78549 312 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 ECM1Q16610 540 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 PABPC1LQ4VXU2 614 aaKnown RBP14.12□□□□□ -0.15
PTCH1-218ENST00000548945 SPECC1Q5M775 1068 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 CD300LGQ6UXG3 332 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 ALKAL1Q6UXT8 129 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 C4orf32Q8N8J7 132 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 IGSF22Q8N9C0 903 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 ITFG1Q8TB96 612 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 RPP25Q9BUL9 199 aaKnown RBP14.12□□□□□ -0.15
PTCH1-218ENST00000548945 KIFC3Q9BVG8 833 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 CCDC94Q9BW85 323 aaPredicted RBP14.12□□□□□ -0.15
PTCH1-218ENST00000548945 TMEM134Q9H6X4 195 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 GDE1Q9NZC3 331 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 LRWD1Q9UFC0 647 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 NOL7Q9UMY1 257 aaKnown RBP14.12□□□□□ -0.15
PTCH1-218ENST00000548945 POLIQ9UNA4 740 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 KIAA1024Q9UPX6 916 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 CDY1Q9Y6F8 540 aa14.12□□□□□ -0.15
PTCH1-218ENST00000548945 ARHGEF37A1IGU5 675 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 SP9P0CG40 484 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 TKTP29401 623 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 GNL2Q13823 731 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 MLF2Q15773 248 aaPredicted RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 ZNF528Q3MIS6 628 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 GLRA4Q5JXX5 417 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 SLC8B1Q6J4K2 584 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 CCDC83Q8IWF9 413 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 NPAS3Q8IXF0 933 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 ZNF461Q8TAF7 563 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 KCNG4Q8TDN1 519 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 ACO2Q99798 780 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 FOXQ1Q9C009 403 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 C17orf75Q9HAS0 396 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 PTPRHQ9HD43 1115 aa14.11□□□□□ -0.15
PTCH1-218ENST00000548945 DDX19AQ9NUU7 478 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 DNMT3BQ9UBC3 853 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 RBM19Q9Y4C8 960 aaKnown RBP14.11□□□□□ -0.15
PTCH1-218ENST00000548945 LAD1O00515 517 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 SYN3O14994 580 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 ECI2O75521 394 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 ABLIM3O94929 683 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 GLULP15104 373 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 KCNE1P15382 129 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 U2AF2P26368 475 aaKnown RBP eCLIP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 NPTX2P47972 431 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 DMP1Q13316 513 aaPredicted RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 SNW1Q13573 536 aaKnown RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 SLC44A4Q53GD3 710 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 C3orf58Q8NDZ4 430 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 ZSCAN31Q96LW9 406 aaPredicted RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 DRC1Q96MC2 740 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 MRPL4Q9BYD3 311 aaKnown RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 BCO2Q9BYV7 579 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 CDT1Q9H211 546 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 SH2B1Q9NRF2 756 aaPredicted RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 HCFC1R1Q9NWW0 138 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 ARHGAP28Q9P2N2 729 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 DNM3Q9UQ16 869 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 MRPS23Q9Y3D9 190 aaKnown RBP14.1□□□□□ -0.15
PTCH1-218ENST00000548945 R4GN57 208 aa14.1□□□□□ -0.15
PTCH1-218ENST00000548945 NCOR2Q9Y618 2525 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 CCDC169A6NNP5 214 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 TBC1D4O60343 1298 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 MICAL2O94851 1124 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 RHOP08100 348 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 MCF2P10911 925 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 PROZP22891 400 aa14.09□□□□□ -0.15
PTCH1-218ENST00000548945 RPL9P32969 192 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms