RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GLRA4Q5JXX5 417 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 CEP135Q66GS9 1140 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 ANKRD40Q6AI12 368 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 FOXR2Q6PJQ5 311 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 RBM43Q6ZSC3 357 aaKnown RBP14.94□□□□□ -0.02
PTCH1-213ENST00000546820 USP37Q86T82 979 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 BRSK2Q8IWQ3 736 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 BEST2Q8NFU1 509 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 NELFBQ8WX92 580 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 DNAJB4Q9UDY4 337 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 UBQLN1Q9UMX0 589 aaKnown RBP14.94□□□□□ -0.02
PTCH1-213ENST00000546820 C2CD2Q9Y426 696 aa14.94□□□□□ -0.02
PTCH1-213ENST00000546820 CITO14578 2027 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 H3BNC9 293 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 NRP1O14786 923 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 MAPK13O15264 365 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 TADA2AO75478 443 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 ARHGEF15O94989 841 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 CD44P16070 742 aaKnown RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 PSMC2P35998 433 aaKnown RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 SLC11A1P49279 550 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 FXR1P51114 621 aaKnown RBP eCLIP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 PAK1Q13153 545 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 BMS1Q14692 1282 aaKnown RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 ZBTB6Q15916 424 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 ZCWPW2Q504Y3 356 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 JADE1Q6IE81 842 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 DCLRE1AQ6PJP8 1040 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 CBWD2Q8IUF1 395 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 KLHL23Q8NBE8 558 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 TMEM169Q96HH4 297 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 ZMAT2Q96NC0 199 aaKnown RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 FNBP1Q96RU3 617 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 CXCL16Q9H2A7 254 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 TTYH1Q9H313 450 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 TMEM63CQ9P1W3 806 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 PLAGL2Q9UPG8 496 aa14.93□□□□□ -0.02
PTCH1-213ENST00000546820 R3HCC1Q9Y3T6 440 aaKnown RBP14.93□□□□□ -0.02
PTCH1-213ENST00000546820 RANBP2P49792 3224 aaKnown RBP14.92□□□□□ -0.02
PTCH1-213ENST00000546820 TDRD15B5MCY1 1934 aaKnown RBP14.92□□□□□ -0.02
PTCH1-213ENST00000546820 NT5C1B-RDH14C9J2C7 533 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 FGF18O76093 207 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 LINC00271P0C7V0 271 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 KRT13P13646 458 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 PLCB3Q01970 1234 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 UBE3AQ05086 875 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 SPAG1Q07617 926 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 CYP24A1Q07973 514 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 PSMD6Q15008 389 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 DUOXA2Q1HG44 320 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 SPATA1Q5VX52 437 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 SLC39A11Q8N1S5 342 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 DEFB123Q8N688 67 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 ZSWIM2Q8NEG5 633 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 IGSF21Q96ID5 467 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 ANKRD36BP1Q96IX9 119 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 MFSD14AQ96MC6 490 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 MKNK1Q9BUB5 465 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 PDE11AQ9HCR9 933 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 ANO10Q9NW15 660 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 HCSTQ9UBK5 93 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 RWDD2AQ9UIY3 292 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 CTNND2Q9UQB3 1225 aa14.92□□□□□ -0.02
PTCH1-213ENST00000546820 CASTOR2A6NHX0 329 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 MEFVO15553 781 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TRAPPC3O43617 180 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 B3GAT3O94766 335 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TNNC2P02585 160 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TMEM191BP0C7N4 346 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 EPB41P11171 864 aaKnown RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TNNI1P19237 187 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 PAX3P23760 479 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 ERCC5P28715 1186 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 AP3M2P53677 418 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TFAMQ00059 246 aaKnown RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 NFKBIBQ15653 356 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 NAB2Q15742 525 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 PTPROQ16827 1216 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TPD52L1Q16890 204 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 INTS8Q75QN2 995 aaKnown RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 FAM186BQ8IYM0 893 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 C18orf25Q96B23 403 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 CCDC127Q96BQ5 260 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 CEP63Q96MT8 703 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 FAM161BQ96MY7 647 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 GAS2L1Q99501 681 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 LMAN2LQ9H0V9 348 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 DPP3Q9NY33 737 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 LZTS1Q9Y250 596 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 PRG3Q9Y2Y8 225 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-213ENST00000546820 TRIP11Q15643 1979 aa14.91□□□□□ -0.02
PTCH1-213ENST00000546820 SLC16A3O15427 465 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 GNA14O95837 355 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 ITGB1P05556 798 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 NFICP08651 508 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 DLATP10515 647 aaKnown RBP14.9□□□□□ -0.02
PTCH1-213ENST00000546820 PBX3P40426 434 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 CASP4P49662 377 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 CLCNKBP51801 687 aa14.9□□□□□ -0.02
PTCH1-213ENST00000546820 PMS1P54277 932 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms