RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PABPC3Q9H361 631 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 SLC38A10Q9HBR0 1119 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 PTPRHQ9HD43 1115 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 KMT5AQ9NQR1 393 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 DNAAF2Q9NVR5 837 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 TBCCD1Q9NVR7 557 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CLIC5Q9NZA1 410 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 PNMA3Q9UL41 463 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 PPP1R9AQ9ULJ8 1098 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 AGAP1Q9UPQ3 857 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NOC2LQ9Y3T9 749 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 ACTL7BQ9Y614 415 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ARID2Q68CP9 1835 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 TANC1Q9C0D5 1861 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 DNAJC25-GNG10A0A024R161 153 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SIGLEC16A6NMB1 481 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 PGRMC1O00264 195 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 PEX11AO75192 247 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SERPING1P05155 500 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CHN1P15882 459 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 RPL13P26373 211 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 VHLP40337 213 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ORC2Q13416 577 aaPredicted RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 ITGA9Q13797 1035 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 DHX34Q14147 1143 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 COL19A1Q14993 1142 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 VWA3BQ502W6 1294 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 MIIPQ5JXC2 388 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CEP128Q6ZU80 1094 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 UBE2Q1Q7Z7E8 422 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NELFCDQ8IXH7 590 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 MYO1HQ8N1T3 1032 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ZNF398Q8TD17 642 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ACER1Q8TDN7 264 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 DNAJC9Q8WXX5 260 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ZNF333Q96JL9 665 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 C8orf48Q96LL4 319 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 TMEM47Q9BQJ4 181 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.62□□□□□ -1.517e-6■■■■□ 21.1
USP28-213ENST00000544967 LZTS2Q9BRK4 669 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CCSER1Q9C0I3 900 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 BHMT2Q9H2M3 363 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 INTS9Q9NV88 658 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 MAD2L2Q9UI95 211 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 LNPEPQ9UIQ6 1025 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 FBXL5Q9UKA1 691 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ZNF214Q9UL59 606 aaPredicted RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 BOLA2-SMG1P6H3BVE0 249 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 TCEA3O75764 348 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NDUFB10O96000 172 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 KRT16P08779 473 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SERPINB4P48594 390 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ACADVLP49748 655 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SERPINB8P50452 374 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 KCNJ2P63252 427 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 PHEXP78562 749 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 TFAP4Q01664 338 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 LSAMPQ13449 338 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 MTMR2Q13614 643 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 MAN2A1Q16706 1144 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 KRT71Q3SY84 523 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ZNF394Q53GI3 561 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 GPATCH4Q5T3I0 446 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 SLFN11Q7Z7L1 901 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 RIOX2Q8IUF8 465 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 GRAMD1CQ8IYS0 662 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 LRRC34Q8IZ02 419 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NDUFAF2Q8N183 169 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SRBD1Q8N5C6 995 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 SMYD1Q8NB12 490 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NEK9Q8TD19 979 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 IFT81Q8WYA0 676 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 BAP1Q92560 729 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 GATA6Q92908 595 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 P2RX5Q93086 422 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 AGAP3Q96P47 875 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 KRT12Q99456 494 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 UBAC1Q9BSL1 405 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 MMADHCQ9H3L0 296 aaPredicted RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 CABP5Q9NP86 173 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 NLRC4Q9NPP4 1024 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CEP72Q9P209 647 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 FZD1Q9UP38 647 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SCAF8Q9UPN6 1271 aaKnown RBP5.62□□□□□ -1.51
USP28-213ENST00000544967 RABGAP1Q9Y3P9 1069 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP28-213ENST00000544967 NR2E3Q9Y5X4 410 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 SLC12A7Q9Y666 1083 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 ZHX2Q9Y6X8 837 aa5.62□□□□□ -1.51
USP28-213ENST00000544967 CCL15-CCL14A0A0B4J2E2 113 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 SMCHD1A6NHR9 2005 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 FAM196BA6NMK8 535 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 hCG_1984214I3L0E3 225 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 MAGEB2O15479 319 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 KLRC4O43908 158 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 AOC2O75106 756 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 TNKSO95271 1327 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CALM1P0DP23 149 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CALM2P0DP24 149 aa5.61□□□□□ -1.51
USP28-213ENST00000544967 CALM3P0DP25 149 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms