RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ACSL3O95573 720 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 CCND1P24385 295 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 MAPK4P31152 587 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 QARSP47897 775 aaKnown RBP14.64□□□□□ -0.07
VPS33A-208ENST00000543633 GCNT1Q02742 428 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 MAP2K1Q02750 393 aaPredicted RBP14.64□□□□□ -0.07
VPS33A-208ENST00000543633 E2F5Q15329 346 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 NUGGCQ68CJ6 796 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 SLC30A10Q6XR72 485 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 FBXL13Q8NEE6 735 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 PARD3BQ8TEW8 1205 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 L3MBTL3Q96JM7 780 aaPredicted RBP14.64□□□□□ -0.07
VPS33A-208ENST00000543633 FBXL18Q96ME1 805 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 ANKRD27Q96NW4 1050 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 TRIM7Q9C029 511 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 UBN1Q9NPG3 1134 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 NKIRAS1Q9NYS0 192 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 C15orf41Q9Y2V0 281 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 ZHX2Q9Y6X8 837 aa14.64□□□□□ -0.07
VPS33A-208ENST00000543633 THAP12O43422 761 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 PSTPIP1O43586 416 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CLTAP09496 248 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CCNB1P14635 433 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 BRAFP15056 766 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ITGA8P53708 1063 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 SNRNP35Q16560 246 aaKnown RBP14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CCDC38Q502W7 563 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 PPP1R2P3Q6NXS1 205 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ASRGL1Q7L266 308 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 MAP4K3Q8IVH8 894 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 C4orf19Q8IY42 314 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 SAMD3Q8N6K7 520 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CCDC89Q8N998 374 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CSRNP1Q96S65 589 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 DBNDD1Q9H9R9 158 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 NINJ2Q9NZG7 142 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ANAPC7Q9UJX3 599 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ANAPC5Q9UJX4 755 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 NEU2Q9Y3R4 380 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 PCDHAC2Q9Y5I4 1007 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CD2APQ9Y5K6 639 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 NDC80O14777 642 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 DHX15O43143 795 aaKnown RBP14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ECE2O60344 883 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 GRIN3BO60391 1043 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ATP5HO75947 161 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CHKAP35790 457 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 SLC18A1P54219 525 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 R3HDM1Q15032 1099 aaKnown RBP14.63□□□□□ -0.07
VPS33A-208ENST00000543633 MTFR1Q15390 333 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 AOC3Q16853 763 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 CCDC174Q6PII3 467 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 PNMA8AQ86V59 439 aaPredicted RBP14.63□□□□□ -0.07
VPS33A-208ENST00000543633 SPICE1Q8N0Z3 855 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ANKRD35Q8N283 1001 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 SEMA4DQ92854 862 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 MIEF2Q96C03 454 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 KLHL29Q96CT2 875 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 FAM212AQ96EL1 285 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 BTBD6Q96KE9 485 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 MFSD14AQ96MC6 490 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 TGS1Q96RS0 853 aaKnown RBP14.63□□□□□ -0.07
VPS33A-208ENST00000543633 PPCSQ9HAB8 311 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 ANKEF1Q9NU02 776 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 EURLQ9NYK6 297 aa14.63□□□□□ -0.07
VPS33A-208ENST00000543633 TISP43B9A030 160 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 UNGP13051 313 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 DPEP1P16444 411 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 ITGB5P18084 799 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 STX2P32856 288 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 ALDH5A1P51649 535 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 BPIFB4P59827 614 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 UBXN2AP68543 259 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 KLF1Q13351 362 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 CCNG2Q16589 344 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 RGS9BPQ6ZS82 235 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 TDRPQ86YL5 185 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 MCOLN2Q8IZK6 566 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 FBF1Q8TES7 1133 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 C1orf54Q8WWF1 131 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 DDX27Q96GQ7 796 aaKnown RBP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 RAB3IPQ96QF0 476 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 SGIP1Q9BQI5 828 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.62□□□□□ -0.07
VPS33A-208ENST00000543633 KCNH7Q9NS40 1196 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 CHST7Q9NS84 486 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 TBC1D22BQ9NU19 505 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 RAB20Q9NX57 234 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 KLHL14Q9P2G3 628 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 UBIAD1Q9Y5Z9 338 aa14.62□□□□□ -0.07
VPS33A-208ENST00000543633 IGF2BP3O00425 579 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS33A-208ENST00000543633 MAGEB2O15479 319 aa14.61□□□□□ -0.07
VPS33A-208ENST00000543633 GBP2P32456 591 aaPredicted RBP14.61□□□□□ -0.07
VPS33A-208ENST00000543633 CLNS1AP54105 237 aaKnown RBP14.61□□□□□ -0.07
VPS33A-208ENST00000543633 LACTBP83111 547 aaPredicted RBP14.61□□□□□ -0.07
VPS33A-208ENST00000543633 LDHDQ86WU2 507 aa14.61□□□□□ -0.07
VPS33A-208ENST00000543633 CPNE8Q86YQ8 564 aa14.61□□□□□ -0.07
VPS33A-208ENST00000543633 C17orf75Q9HAS0 396 aa14.61□□□□□ -0.07
VPS33A-208ENST00000543633 AGO4Q9HCK5 861 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms