RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PLS3P13797 630 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 RFX1P22670 979 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 FSHRP23945 695 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 CLCNKBP51801 687 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 MAPK7Q13164 816 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 RAB33AQ14088 237 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 NOLC1Q14978 699 aaKnown RBP eCLIP14.37□□□□□ -0.11
RTN3-213ENST00000543552 UVSSAQ2YD98 709 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 SYT2Q8N9I0 419 aaPredicted RBP14.37□□□□□ -0.11
RTN3-213ENST00000543552 FLCNQ8NFG4 579 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 FEZF2Q8TBJ5 459 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 SNX27Q96L92 541 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 RTP3Q9BQQ7 232 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 MMTAG2Q9BU76 263 aaKnown RBP14.37□□□□□ -0.11
RTN3-213ENST00000543552 TARS2Q9BW92 718 aaKnown RBP14.37□□□□□ -0.11
RTN3-213ENST00000543552 PTPRHQ9HD43 1115 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 LARSQ9P2J5 1176 aaKnown RBP14.37□□□□□ -0.11
RTN3-213ENST00000543552 MTRRQ9UBK8 725 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 WNT16Q9UBV4 365 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 BACE2Q9Y5Z0 518 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 PLA2G4BP0C869 781 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 SRFP11831 508 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 LAMP2P13473 410 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 KCNE1P15382 129 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 PROZP22891 400 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 RPL9P32969 192 aaKnown RBP14.36□□□□□ -0.11
RTN3-213ENST00000543552 OR1D2P34982 312 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 UBA7P41226 1012 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 OSTNP61366 133 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 XKR4Q5GH76 650 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 ZPBP2Q6X784 338 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 KCNK18Q7Z418 384 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 BRAPQ7Z569 592 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 SIX5Q8N196 739 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 TMEM105Q8N8V8 129 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 SLC7A14Q8TBB6 771 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 CALML4Q96GE6 196 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 MYADMQ96S97 322 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 CNTN3Q9P232 1028 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 ANKFY1Q9P2R3 1169 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 MYO15AQ9UKN7 3530 aa14.36□□□□□ -0.11
RTN3-213ENST00000543552 PODXLO00592 558 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 SYN3O14994 580 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 CLDN3O15551 220 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 HARSP12081 509 aaKnown RBP14.35□□□□□ -0.11
RTN3-213ENST00000543552 AOC1P19801 751 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 ABCD1P33897 745 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 RAD51AP2Q09MP3 1159 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 KYAT1Q16773 422 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 TMEM119Q4V9L6 283 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 AXDND1Q5T1B0 1012 aaPredicted RBP14.35□□□□□ -0.11
RTN3-213ENST00000543552 LARP1BQ659C4 914 aaKnown RBP14.35□□□□□ -0.11
RTN3-213ENST00000543552 ALKAL1Q6UXT8 129 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 MTSS1LQ765P7 747 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 TAS1R3Q7RTX0 852 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 GRASPQ7Z6J2 395 aaPredicted RBP14.35□□□□□ -0.11
RTN3-213ENST00000543552 CEP120Q8N960 986 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 TMEM161BQ8NDZ6 487 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 RASSF8Q8NHQ8 419 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 BICD1Q96G01 975 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 CXCL16Q9H2A7 254 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 CDH7Q9ULB5 785 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 ODF2LQ9ULJ1 636 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 POLIQ9UNA4 740 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 NUB1Q9Y5A7 615 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 CDY1Q9Y6F8 540 aa14.35□□□□□ -0.11
RTN3-213ENST00000543552 SFI1A8K8P3 1242 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 ANHXE9PGG2 379 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 H0Y858 1186 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 H7C4K7 107 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 MAPTP10636 758 aaKnown RBP14.34□□□□□ -0.11
RTN3-213ENST00000543552 PDCP20941 246 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 TKTP29401 623 aaKnown RBP14.34□□□□□ -0.11
RTN3-213ENST00000543552 ELF1P32519 619 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 MATR3P43243 847 aaKnown RBP eCLIP14.34□□□□□ -0.111e-6■■□□□ 13.3
RTN3-213ENST00000543552 SLC12A3P55017 1021 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 HTR4Q13639 388 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 SLC44A3Q8N4M1 653 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 TBC1D32Q96NH3 1257 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 PNMA5Q96PV4 448 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 GOLGA2P5Q9HBQ8 144 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 KCNH3Q9ULD8 1083 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 CITO14578 2027 aa14.34□□□□□ -0.11
RTN3-213ENST00000543552 VWA8A3KMH1 1905 aa14.33□□□□□ -0.11
RTN3-213ENST00000543552 STK25O00506 426 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 ABLIM1O14639 778 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 CCL16O15467 120 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 ADAM12O43184 909 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 NARSO43776 548 aaKnown RBP14.33□□□□□ -0.12
RTN3-213ENST00000543552 CFHP08603 1231 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 LONP1P36776 959 aaKnown RBP14.33□□□□□ -0.12
RTN3-213ENST00000543552 MCL1Q07820 350 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 PABPC1LQ4VXU2 614 aaKnown RBP14.33□□□□□ -0.12
RTN3-213ENST00000543552 VARS2Q5ST30 1063 aaKnown RBP14.33□□□□□ -0.12
RTN3-213ENST00000543552 CWF19L1Q69YN2 538 aaKnown RBP14.33□□□□□ -0.12
RTN3-213ENST00000543552 SLC8B1Q6J4K2 584 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 APPL2Q8NEU8 664 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 RSAD2Q8WXG1 361 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 PLIN2Q99541 437 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 PLEKHA5Q9HAU0 1116 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms