RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CNOT8Q9UFF9 292 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 EVPLQ92817 2033 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 UMODL1Q5DID0 1318 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 CNTNAP2Q9UHC6 1331 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 SPOPO43791 374 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 TXNP10599 105 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 ENPEPQ07075 957 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 TCEAL1Q15170 157 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 FASTKD5Q7L8L6 764 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 RHPN2Q8IUC4 686 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 FAM167AQ96KS9 214 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 ZIM3Q96PE6 472 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 TRIM31Q9BZY9 425 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 GTF3C4Q9UKN8 822 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 DIS3Q9Y2L1 958 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 DAPK3O43293 454 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 MSCO60682 206 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 CFHP08603 1231 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 ECHS1P30084 290 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 NNTQ13423 1086 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 LLGL1Q15334 1064 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 LLGL2Q6P1M3 1020 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 TMEM270Q6UE05 265 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 USP50Q70EL3 339 aaPredicted RBP17.49■□□□□ 0.39
COL4A1-204ENST00000543140 GOLGA6L1Q8N7Z2 621 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 CCDC26Q8TAB7 109 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 RUFY1Q96T51 708 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 CGRRF1Q99675 332 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 TRIM51Q9BSJ1 452 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 NEUROG2Q9H2A3 272 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 SLITRK6Q9H5Y7 841 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 NUB1Q9Y5A7 615 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 MIF4GDA9UHW6 222 aaKnown RBP17.49■□□□□ 0.39
COL4A1-204ENST00000543140 MTA2O94776 668 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 CUL2Q13617 745 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 PLCB4Q15147 1175 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 GJC2Q5T442 439 aaPredicted RBP17.49■□□□□ 0.39
COL4A1-204ENST00000543140 IER5Q5VY09 327 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 MAATS1Q7Z4T9 603 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 PASD1Q8IV76 773 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 ATP8B4Q8TF62 1192 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 TRIM7Q9C029 511 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 DPH5Q9H2P9 285 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 ZNF408Q9H9D4 720 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 PCDHB4Q9Y5E5 795 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 PCDHB2Q9Y5E7 798 aa17.49■□□□□ 0.39
COL4A1-204ENST00000543140 KRT14P02533 472 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 SCP2P22307 547 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 PEX5P50542 639 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 ALS2CLQ60I27 953 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CCDC62Q6P9F0 684 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 ARMC9Q7Z3E5 817 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CDR2LQ86X02 465 aaPredicted RBP17.48■□□□□ 0.39
COL4A1-204ENST00000543140 WHAMMQ8TF30 809 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 KCNN1Q92952 543 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 NLRP4Q96MN2 994 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 RPS6KC1Q96S38 1066 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 PYGMP11217 842 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CAPN2P17655 700 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 EFNA5P52803 228 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 NOP14P78316 857 aaKnown RBP17.48■□□□□ 0.39
COL4A1-204ENST00000543140 MKRN3Q13064 507 aaKnown RBP17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CUL1Q13616 776 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 NCOA4Q13772 614 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CFAP58Q5T655 872 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 KCNV1Q6PIU1 500 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 CYFIP2Q96F07 1278 aa17.48■□□□□ 0.39
COL4A1-204ENST00000543140 NAP1L3Q99457 506 aaPredicted RBP17.48■□□□□ 0.39
COL4A1-204ENST00000543140 MRPL4Q9BYD3 311 aaKnown RBP17.48■□□□□ 0.39
COL4A1-204ENST00000543140 PCNTO95613 3336 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 GOLGA6L10A0A0M3HER8 536 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 GOLGA6CA6NDK9 693 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 LGR5O75473 907 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 TOM1L1O75674 476 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 CST3P01034 146 aaPredicted RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 PRKCBP05771 671 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 GOLGA6DP0CG33 693 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 UNGP13051 313 aaPredicted RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ACO1P21399 889 aaKnown RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 PTENP60484 403 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 OSTNP61366 133 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ARL8AQ96BM9 186 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 CCDC113Q9H0I3 377 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 GOLGA6AQ9NYA3 693 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 UVRAGQ9P2Y5 699 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 RRM1P23921 792 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 POU5F1Q01860 360 aaKnown RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 MXD4Q14582 209 aaPredicted RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 MAPK6Q16659 721 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ZPBP2Q6X784 338 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 PLPPR4Q7Z2D5 763 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 MCOLN2Q8IZK6 566 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 IQCKQ8N0W5 287 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ZC3H15Q8WU90 426 aaKnown RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 TCP11Q8WWU5 503 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 PIK3R5Q8WYR1 880 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 CD101Q93033 1021 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 FAM81BQ96LP2 452 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ACO2Q99798 780 aaKnown RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 WNT8AQ9H1J5 351 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms