RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 WNT7BP56706 349 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 SMAD3P84022 425 aaKnown RBP18.56■□□□□ 0.56
LIG1-204ENST00000542460 MYL5Q02045 173 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 ENPEPQ07075 957 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 SPAG1Q07617 926 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 TMEM132DQ14C87 1099 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 ZBTB6Q15916 424 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 JADE1Q6IE81 842 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 TMC2Q8TDI7 906 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 PARD3BQ8TEW8 1205 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 BORCS6Q96GS4 357 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 PBX4Q9BYU1 374 aa18.56■□□□□ 0.56
LIG1-204ENST00000542460 METTL14Q9HCE5 456 aaKnown RBP18.56■□□□□ 0.56
LIG1-204ENST00000542460 UBQLN1Q9UMX0 589 aaKnown RBP18.56■□□□□ 0.56
LIG1-204ENST00000542460 LCHNA4D1U4 455 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 DDHD2O94830 711 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 NFICP08651 508 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 DLATP10515 647 aaKnown RBP18.55■□□□□ 0.56
LIG1-204ENST00000542460 MYOGP15173 224 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 VAMP7P51809 220 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 ZNF445P59923 1031 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 MCCD1P59942 119 aaPredicted RBP18.55■□□□□ 0.56
LIG1-204ENST00000542460 TUSC3Q13454 348 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 NAB2Q15742 525 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 CCDC40Q4G0X9 1142 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 FRMD5Q7Z6J6 570 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 ZNF280BQ86YH2 543 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 WDR49Q8IV35 697 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 CACTINQ8WUQ7 758 aaKnown RBP18.55■□□□□ 0.56
LIG1-204ENST00000542460 ANP32EQ9BTT0 268 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 THAP9Q9H5L6 903 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 ARMCX3Q9UH62 379 aaPredicted RBP18.55■□□□□ 0.56
LIG1-204ENST00000542460 NFE2L3Q9Y4A8 694 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 MRPL42Q9Y6G3 142 aaKnown RBP18.55■□□□□ 0.56
LIG1-204ENST00000542460 PTPRSQ13332 1948 aa18.55■□□□□ 0.56
LIG1-204ENST00000542460 IKBKBO14920 756 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 CA3P07451 260 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 TNNI1P19237 187 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 CYP3A5P20815 502 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 PBX2P40425 430 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 MARSP56192 900 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 CLDN10P78369 228 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 DSC1Q08554 894 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 BFSP1Q12934 665 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 CGRRF1Q99675 332 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 TSPY26PQ9H489 355 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 CWH43Q9H720 699 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 NRDE2Q9H7Z3 1164 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 YBX2Q9Y2T7 364 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 LAMA2P24043 3122 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 COL4A6Q14031 1691 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 SMTNL1A8MU46 457 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 TFAMQ00059 246 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 DUOXA2Q1HG44 320 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 SPOUT1Q5T280 376 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 FAM114A1Q8IWE2 563 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 EFCAB13Q8IY85 973 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 COLGALT2Q8IYK4 626 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 AOPEPQ8N6M6 819 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 BEST2Q8NFU1 509 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 PLEKHO2Q8TD55 490 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 CLP1Q92989 425 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 C18orf25Q96B23 403 aaPredicted RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 POP1Q99575 1024 aaKnown RBP18.54■□□□□ 0.56
LIG1-204ENST00000542460 TMEM175Q9BSA9 504 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 INTS13Q9NVM9 706 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 HCSTQ9UBK5 93 aa18.54■□□□□ 0.56
LIG1-204ENST00000542460 LINC01553A4QN01 128 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 CARNS1A5YM72 827 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 LRRIQ3A6PVS8 624 aaPredicted RBP18.53■□□□□ 0.56
LIG1-204ENST00000542460 ZC3H11AO75152 810 aaKnown RBP eCLIP18.53■□□□□ 0.56
LIG1-204ENST00000542460 ALDH2P05091 517 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 TMEM191BP0C7N4 346 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 LAG3P18627 525 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 ALDH7A1P49419 539 aaKnown RBP18.53■□□□□ 0.56
LIG1-204ENST00000542460 AP3M2P53677 418 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 DLG4P78352 724 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 SOX4Q06945 474 aaPredicted RBP18.53■□□□□ 0.56
LIG1-204ENST00000542460 IRF2BP1Q8IU81 584 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 ANKRD36BP1Q96IX9 119 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 UROC1Q96N76 676 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 AAASQ9NRG9 546 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 SAMSN1Q9NSI8 373 aaKnown RBP18.53■□□□□ 0.56
LIG1-204ENST00000542460 FANCLQ9NW38 375 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 DNAJB4Q9UDY4 337 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 TUBGCP4Q9UGJ1 667 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 RWDD3Q9Y3V2 267 aa18.53■□□□□ 0.56
LIG1-204ENST00000542460 BECN2A8MW95 431 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 B4GALT3O60512 393 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 TNNC2P02585 160 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 RPL9P32969 192 aaKnown RBP18.52■□□□□ 0.56
LIG1-204ENST00000542460 BCAR1P56945 870 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 NCAPHQ15003 741 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 LMBRD2Q68DH5 695 aaPredicted RBP18.52■□□□□ 0.56
LIG1-204ENST00000542460 DHX40Q8IX18 779 aaKnown RBP18.52■□□□□ 0.56
LIG1-204ENST00000542460 DDX27Q96GQ7 796 aaKnown RBP18.52■□□□□ 0.56
LIG1-204ENST00000542460 CNOT6LQ96LI5 555 aaKnown RBP18.52■□□□□ 0.56
LIG1-204ENST00000542460 SLC28A3Q9HAS3 691 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 DPP3Q9NY33 737 aa18.52■□□□□ 0.56
LIG1-204ENST00000542460 MAGEC2Q9UBF1 373 aaPredicted RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms