RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 C11orf84Q9BUA3 381 aaPredicted RBP19■□□□□ 0.63
CLSTN3-210ENST00000540931 COLEC11Q9BWP8 271 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 CITO14578 2027 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 ARHGEF37A1IGU5 675 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 LINC01553A4QN01 128 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 C5orf67F2Z3F1 127 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 CA3P07451 260 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 BMPR1AP36894 532 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 SCNN1GP51170 649 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 ERVK-21P61565 698 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 KRT17Q04695 432 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 UBE3AQ05086 875 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 DSC1Q08554 894 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 GRIN2CQ14957 1233 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 TMEM132DQ14C87 1099 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 PSMD6Q15008 389 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 CEP135Q66GS9 1140 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 ANKRD40Q6AI12 368 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 CRELD2Q6UXH1 353 aaPredicted RBP18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 WDR49Q8IV35 697 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 ZC3H3Q8IXZ2 948 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 CSGALNACT2Q8N6G5 542 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 KIF12Q96FN5 646 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 ANKRD36BP1Q96IX9 119 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 PPP1R10Q96QC0 940 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 KLK14Q9P0G3 267 aa18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 PUF60Q9UHX1 559 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 FNDC1Q4ZHG4 1894 aaPredicted RBP18.99■□□□□ 0.63
CLSTN3-210ENST00000540931 LACTBL1A8MY62 500 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 TISP43B9A030 160 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 TRAPPC3O43617 180 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 POMCP01189 267 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 TNFSF9P41273 254 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 RABGGTBP53611 331 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 CYP24A1Q07973 514 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 ELAVL2Q12926 359 aaKnown RBP18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 DUOXA2Q1HG44 320 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 PAN2Q504Q3 1202 aaKnown RBP18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 FRMD5Q7Z6J6 570 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 FAM186BQ8IYM0 893 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 GSTCDQ8NEC7 633 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 FAM212AQ96EL1 285 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 ZFP42Q96MM3 310 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 CTNND2Q9UQB3 1225 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 FAN1Q9Y2M0 1017 aa18.98■□□□□ 0.63
CLSTN3-210ENST00000540931 MEIS3P2A8K0S8 358 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 GRXCR1A8MXD5 290 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 PTGESO14684 152 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TNNC2P02585 160 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TMEM191BP0C7N4 346 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 CD44P16070 742 aaKnown RBP18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 PNPLA4P41247 253 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 MCCD1P59942 119 aaPredicted RBP18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 ZBTB6Q15916 424 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 SPATA1Q5VX52 437 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TTI2Q6NXR4 508 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 DCLRE1AQ6PJP8 1040 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 KCNT2Q6UVM3 1135 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TMCO2Q7Z6W1 182 aaPredicted RBP18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TMEM192Q8IY95 271 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 COLGALT2Q8IYK4 626 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 ENOX1Q8TC92 643 aaKnown RBP18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 TMEM169Q96HH4 297 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 CWH43Q9H720 699 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 SPG21Q9NZD8 308 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 LZTS1Q9Y250 596 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 MRPL42Q9Y6G3 142 aaKnown RBP18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 RALGAPA2Q2PPJ7 1873 aa18.97■□□□□ 0.63
CLSTN3-210ENST00000540931 PTPRSQ13332 1948 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 GOLGA8IPA6NC78 632 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 GOLGA8JA6NMD2 632 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 TMEM189-UBE2V1I3L0A0 370 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 ZC3H11AO75152 810 aaKnown RBP eCLIP18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 TNNI1P19237 187 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 LRPAP1P30533 357 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 GTF2H1P32780 548 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 PLCB3Q01970 1234 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 TAP1Q03518 808 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 TYRO3Q06418 890 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 DPCR1Q3MIW9 517 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 SEZ6Q53EL9 994 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 PDE12Q6L8Q7 609 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 CBWD2Q8IUF1 395 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 COLGALT1Q8NBJ5 622 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 RDH13Q8NBN7 331 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 BPIFA3Q9BQP9 254 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 LMAN2LQ9H0V9 348 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 NKX2-4Q9H2Z4 354 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 THAP9Q9H5L6 903 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 NRDE2Q9H7Z3 1164 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 ARMCX3Q9UH62 379 aaPredicted RBP18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 ITGA11Q9UKX5 1188 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 SSX2IPQ9Y2D8 614 aa18.96■□□□□ 0.63
CLSTN3-210ENST00000540931 MUC3AQ02505 3323 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 SMTNL1A8MU46 457 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 GALTP07902 379 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 CTNNB1P35222 781 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 VAMP7P51809 220 aa18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 MARSP56192 900 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-210ENST00000540931 BCAR1P56945 870 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms