RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 GPR161Q8N6U8 529 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 C3orf58Q8NDZ4 430 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 DDX27Q96GQ7 796 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 CNTNAP3BQ96NU0 1288 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PPP1R10Q96QC0 940 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 CNTNAP3Q9BZ76 1288 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PARD6AQ9NPB6 346 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 SNTG2Q9NY99 539 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 GDE1Q9NZC3 331 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PARP2Q9UGN5 583 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 FRYQ5TBA9 3013 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 ZZEF1O43149 2961 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 A0A087WWV3 80 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ACKR2O00590 384 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 N4BP3O15049 544 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 USO1O60763 962 aaKnown RBP8.07□□□□□ -1.12
YBX3-209ENST00000540747 DTNBO60941 627 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 KRT37O76014 449 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 CDKL5O76039 1030 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 MICAL2O94851 1124 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ABLIM3O94929 683 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 BAG4O95429 457 aaKnown RBP8.07□□□□□ -1.12
YBX3-209ENST00000540747 THP07101 528 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 RHOP08100 348 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 CEBPBP17676 345 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 OR1D2P34982 312 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 MTAPQ13126 283 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 UPP1Q16831 310 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 XKR4Q5GH76 650 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ZBTB41Q5SVQ8 909 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 TANGO2Q6ICL3 276 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 SLC8B1Q6J4K2 584 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 TPRG1Q6ZUI0 275 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 MCPH1Q8NEM0 835 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 PIGOQ8TEQ8 1089 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ING5Q8WYH8 240 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 DNASE1L2Q92874 299 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ELSPBP1Q96BH3 223 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 NELL2Q99435 816 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 HINFPQ9BQA5 517 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ANP32EQ9BTT0 268 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 FAM126AQ9BYI3 521 aaPredicted RBP8.07□□□□□ -1.12
YBX3-209ENST00000540747 CHRDQ9H2X0 955 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 TTC12Q9H892 705 aaPredicted RBP8.07□□□□□ -1.12
YBX3-209ENST00000540747 DAXXQ9UER7 740 aaPredicted RBP8.07□□□□□ -1.12
YBX3-209ENST00000540747 TPCN1Q9ULQ1 816 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 PCDHA12Q9UN75 941 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 USP20Q9Y2K6 914 aa8.07□□□□□ -1.12
YBX3-209ENST00000540747 ZFYVE26Q68DK2 2539 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 NCANO14594 1321 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 LRRIQ4A6NIV6 560 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 PRR5-ARHGAP8B1AHC4 643 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ARNTLO00327 626 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 MOSPD3O75425 235 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 MED24O75448 989 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 PRKCBP05771 671 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 SDHBP21912 280 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TKTP29401 623 aaKnown RBP8.06□□□□□ -1.12
YBX3-209ENST00000540747 CCR2P41597 374 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ARHGAP8P85298 464 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ROR1Q01973 937 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 LMNB2Q03252 620 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 SOX4Q06945 474 aaPredicted RBP8.06□□□□□ -1.12
YBX3-209ENST00000540747 ADCY1Q08828 1119 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 MRPL58Q14197 206 aaKnown RBP8.06□□□□□ -1.12
YBX3-209ENST00000540747 CALCRLQ16602 461 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 NT5DC1Q5TFE4 455 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TSSK4Q6SA08 328 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ALKAL1Q6UXT8 129 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ZNF852Q6ZMS4 543 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 CATSPER3Q86XQ3 398 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 CEP57Q86XR8 500 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 MAP4K3Q8IVH8 894 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 NOSTRINQ8IVI9 506 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TCEAL8Q8IYN2 117 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 ATRIPQ8WXE1 791 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 IER2Q9BTL4 223 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 C2orf40Q9H1Z8 148 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TMEM60Q9H2L4 133 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TUFT1Q9NNX1 390 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 TRPV5Q9NQA5 729 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 HEBP1Q9NRV9 189 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 PDRG1Q9NUG6 133 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 NCDNQ9UBB6 729 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 MRPS23Q9Y3D9 190 aaKnown RBP8.06□□□□□ -1.12
YBX3-209ENST00000540747 CDY1Q9Y6F8 540 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 CACNA1GO43497 2377 aa8.06□□□□□ -1.12
YBX3-209ENST00000540747 WDR27A2RRH5 827 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 ABLIM1O14639 778 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 MEFVO15553 781 aaPredicted RBP8.05□□□□□ -1.12
YBX3-209ENST00000540747 MARCH6O60337 910 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 NEMFO60524 1076 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 B3GAT3O94766 335 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 XBP1P17861 261 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 CYP11B2P19099 503 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 KRT2P35908 639 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 NAMPTP43490 491 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 CLCNKBP51801 687 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 EPHA5P54756 1037 aa8.05□□□□□ -1.12
YBX3-209ENST00000540747 PRPF4BQ13523 1007 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms