RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TRMT2AQ8IZ69 625 aaKnown RBP9.21□□□□□ -0.94
YBX3-208ENST00000540447 USP38Q8NB14 1042 aa9.21□□□□□ -0.94
YBX3-208ENST00000540447 RIN3Q8TB24 985 aa9.21□□□□□ -0.94
YBX3-208ENST00000540447 FNIP1Q8TF40 1166 aa9.21□□□□□ -0.94
YBX3-208ENST00000540447 NEUROG2Q9H2A3 272 aa9.21□□□□□ -0.94
YBX3-208ENST00000540447 AXIN1O15169 862 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 KLHL18O94889 574 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 TTKP33981 857 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 MAPK10P53779 464 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ITKQ08881 620 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 XRCC4Q13426 336 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PDK3Q15120 406 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 HIF1AQ16665 826 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 USH1GQ495M9 461 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 DNAJC24Q6P3W2 148 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SLC25A41Q8N5S1 370 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 POC5Q8NA72 575 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 LRRC20Q8TCA0 184 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PABPC3Q9H361 631 aaKnown RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 DOLKQ9UPQ8 538 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SPDYE5A6NIY4 337 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 K7ENM7 598 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 TRIM13O60858 407 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SPAG6O75602 509 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SP100P23497 879 aaPredicted RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 NR1I3Q14994 352 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ANGPTL8Q6UXH0 198 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PCYOX1LQ8NBM8 494 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 CNPY3Q9BT09 278 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 TEX13BQ9BXU2 312 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PCDHB6Q9Y5E3 794 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PCDHB4Q9Y5E5 795 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 KIF21AQ7Z4S6 1674 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ARHGAP5Q13017 1502 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ZBED4O75132 1171 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 FBLN1P23142 703 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 FXR1P51114 621 aaKnown RBP eCLIP9.2□□□□□ -0.94
YBX3-208ENST00000540447 ANKMY2Q8IV38 441 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 CEP95Q96GE4 821 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 EPAS1Q99814 870 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ANAPC7Q9UJX3 599 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SLC12A4Q9UP95 1085 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 CLCN2P51788 898 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ATN1P54259 1190 aaPredicted RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 SPANXN2Q5MJ10 180 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 LAYNQ6UX15 382 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 TMPRSS6Q8IU80 811 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 EPS8L3Q8TE67 593 aaKnown RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 OTULINQ96BN8 352 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 C9orf72Q96LT7 481 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 GCNAQ96QF7 691 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 FBXO28Q9NVF7 368 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PSMA4P25789 261 aaKnown RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 PRCPP42785 496 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 KCNJ2P63252 427 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ZNF200P98182 395 aaPredicted RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 TP53BP2Q13625 1128 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 AASDHQ4L235 1098 aaPredicted RBP9.2□□□□□ -0.94
YBX3-208ENST00000540447 FAM83BQ5T0W9 1011 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 PDZK1Q5T2W1 519 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 GALNT17Q6IS24 598 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 JAMLQ86YT9 394 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 CCNYQ8ND76 341 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ERP44Q9BS26 406 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 SHCBP1LQ9BZQ2 653 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ENTPD7Q9NQZ7 604 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 MAST3O60307 1309 aa9.2□□□□□ -0.94
YBX3-208ENST00000540447 ENO2P09104 434 aaPredicted RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 RAG1P15918 1043 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 ZNF846Q147U1 533 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 RASA2Q15283 850 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TAB1Q15750 504 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 PDCD4Q53EL6 469 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 ARHGEF19Q8IW93 802 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TTC13Q8NBP0 860 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 SSH3Q8TE77 659 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 ATXN2LQ8WWM7 1075 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 E2F7Q96AV8 911 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 RBM15Q96T37 977 aaKnown RBP eCLIP9.19□□□□□ -0.94
YBX3-208ENST00000540447 MOV10Q9HCE1 1003 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 TPST1O60507 370 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 CALB1P05937 261 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TYK2P29597 1187 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 ABCE1P61221 599 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 CCSAPQ6IQ19 270 aaPredicted RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 ISLR2Q6UXK2 745 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 IFNEQ86WN2 208 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 ARID3BQ8IVW6 561 aaPredicted RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 RMDN1Q96DB5 314 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 USE1Q9NZ43 259 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 SFMBT1Q9UHJ3 866 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 SERPINB13Q9UIV8 391 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 EFCAB5A4FU69 1503 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 SP4Q02446 784 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.19□□□□□ -0.94
YBX3-208ENST00000540447 LGALS3BPQ08380 585 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TRAF3Q13114 568 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 DQX1Q8TE96 717 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 KCNB2Q92953 911 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 ARHGEF3Q9NR81 526 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms