RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RPTORQ8N122 1335 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 KANSL1LA0AUZ9 987 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 SPDYE16A6NNV3 312 aaPredicted RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 DDX3XO00571 662 aaKnown RBP eCLIP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 OPHN1O60890 802 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 LDHAP00338 332 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PDGFRBP09619 1106 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 CDK8P49336 464 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 ARFIP2P53365 341 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PDE1BQ01064 536 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 EARS2Q5JPH6 523 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PDXDC1Q6P996 788 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 KLHL35Q6PF15 583 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 FNDC8Q8TC99 324 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 IGDCC4Q8TDY8 1250 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 HSPBAP1Q96EW2 488 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 KCNK9Q9NPC2 374 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 DDX18Q9NVP1 670 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 TMOD2Q9NZR1 351 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 SPO11Q9Y5K1 396 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 WASF2Q9Y6W5 498 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 MAPK13O15264 365 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 GSTT2P0CG29 244 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 GSTT2BP0CG30 244 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 ZBTB48P10074 688 aaPredicted RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PCP11498 1178 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 POU5F1Q01860 360 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 GABPAQ06546 454 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 ITGA9Q13797 1035 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 ZNF174Q15697 407 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 MFSD5Q6N075 450 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 CCDC174Q6PII3 467 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 IZUMO2Q6UXV1 221 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 B3GNT6Q6ZMB0 384 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 C16orf86Q6ZW13 317 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 TRIM22Q8IYM9 498 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 CCDC82Q8N4S0 544 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 TRPM4Q8TD43 1214 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 CLIP3Q96DZ5 547 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 HNRNPABQ99729 332 aaKnown RBP10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PACSIN1Q9BY11 444 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 PITPNM3Q9BZ71 974 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 NT5C3AQ9H0P0 336 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 LY9Q9HBG7 655 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 UBAP1Q9NZ09 502 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 HESX1Q9UBX0 185 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 RASAL2Q9UJF2 1139 aa10.08□□□□□ -0.8
CTNNA1-243ENST00000540387 NMT2O60551 498 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 ENTPD3O75355 529 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 SERPINB7O75635 380 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 PDE5AO76074 875 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 VPS41P49754 854 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 PLTPP55058 493 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TFAP4Q01664 338 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 CDR2Q01850 454 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 MPP2Q14168 576 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 CDAN1Q8IWY9 1227 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 ZNF444Q8N0Y2 327 aaPredicted RBP10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 DGCR14Q96DF8 476 aaKnown RBP10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 CADM1Q9BY67 442 aaKnown RBP10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 SYNCQ9H7C4 482 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TIMMDC1Q9NPL8 285 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 SERPINB13Q9UIV8 391 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 SBF1O95248 1867 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TSPY2A6NKD2 308 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 VILLO15195 856 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 HLA-DOAP06340 250 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 COL6A2P12110 1019 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 XBP1P17861 261 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 GTF2H1P32780 548 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 STX2P32856 288 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 HIRAP54198 1017 aaPredicted RBP10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 DSG1Q02413 1049 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 MAP3K10Q02779 954 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 BCL2A1Q16548 175 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TMEM67Q5HYA8 995 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 DUPD1Q68J44 220 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 ANKRD40Q6AI12 368 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 C3orf62Q6ZUJ4 267 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 SGMS1Q86VZ5 419 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 CEP70Q8NHQ1 597 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 FBXO25Q8TCJ0 367 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 STMN2Q93045 179 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TMEM87BQ96K49 555 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 MAGEB18Q96M61 343 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 ECSITQ9BQ95 431 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 POLR3CQ9BUI4 534 aaPredicted RBP10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TMEM39BQ9GZU3 492 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 EPB41L1Q9H4G0 881 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 NDUFA13Q9P0J0 144 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 PI4KBQ9UBF8 816 aa10.07□□□□□ -0.8
CTNNA1-243ENST00000540387 TMEM110-MUSTN1A8MSY1 372 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 DCTN3O75935 186 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 BMP15O95972 392 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 TAC1P20366 129 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 SERPINB8P50452 374 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 PPP2R5CQ13362 524 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 ZDHHC24Q6UX98 284 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 UNC13DQ70J99 1090 aa10.06□□□□□ -0.8
CTNNA1-243ENST00000540387 ZBED8Q8IZ13 594 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms