RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 GOLGA8SH3BPF8 625 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 DDNO94850 711 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-213ENST00000540338 PHKA2P46019 1235 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 RTP1P59025 263 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 GCNT1Q02742 428 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 CCDC121Q6ZUS5 278 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 RHOT1Q8IXI2 618 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 FAM71AQ8IYT1 594 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 EPS8L1Q8TE68 723 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 PRPF31Q8WWY3 499 aaKnown RBP11.5□□□□□ -0.57
CLIP1-213ENST00000540338 SENP7Q9BQF6 1050 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 SPON1Q9HCB6 807 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 SLC5A4Q9NY91 659 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 SLX4Q8IY92 1834 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 IFNB1P01574 187 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 VGLL4Q14135 290 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 LRIG3Q6UXM1 1119 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 JAMLQ86YT9 394 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 ANKS4BQ8N8V4 417 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 C12orf42Q96LP6 360 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 HEMGNQ9BXL5 484 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 FAM53CQ9NYF3 392 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 ZMYM2Q9UBW7 1377 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 NCANO14594 1321 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 RNF8O76064 485 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 KRT1P04264 644 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 KCNA2P16389 499 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 TNFRSF8P28908 595 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 PMS2P54278 862 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 SNX16P57768 344 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 CUL2Q13617 745 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 METTL7BQ6UX53 244 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 PPP1R16BQ96T49 567 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 ANAPC5Q9UJX4 755 aa11.5□□□□□ -0.57
CLIP1-213ENST00000540338 AJAP1Q9UKB5 411 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-213ENST00000540338 NDC80O14777 642 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 GAS2O43903 313 aaKnown RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 LRRC71Q8N4P6 559 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 NLRP7Q8WX94 980 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SHC3Q92529 594 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 PPP1R37O75864 691 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 PSMD6Q15008 389 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 TRIP13Q15645 432 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SGSM1Q2NKQ1 1148 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ABHD15Q6UXT9 468 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF572Q7Z3I7 529 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 MICALL1Q8N3F8 863 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SH2D3CQ8N5H7 860 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ZBED3Q96IU2 234 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 MIS12Q9H081 205 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 PORCNQ9H237 461 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 RASSF4Q9H2L5 321 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 PARVAQ9NVD7 372 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF214Q9UL59 606 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 MYH4Q9Y623 1939 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 VIMP08670 466 aaKnown RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 IBSPP21815 317 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SSTR3P32745 418 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 TNFAIP2Q03169 654 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 RIOX2Q8IUF8 465 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 C1orf54Q8WWF1 131 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 HES6Q96HZ4 224 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 BTBD6Q96KE9 485 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 NKIRAS1Q9NYS0 192 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 IP6K2Q9UHH9 426 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 USP20Q9Y2K6 914 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF541Q9H0D2 1346 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 FZD9O00144 591 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF862O60290 1169 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 PGK2P07205 417 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 ERVK-9P63128 1117 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SEZ6Q53EL9 994 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SLC13A5Q86YT5 568 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-213ENST00000540338 LRRC57Q8N9N7 239 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 BORCS6Q96GS4 357 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 CGRRF1Q99675 332 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 SAMD15Q9P1V8 674 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 IKBKGQ9Y6K9 419 aa11.49□□□□□ -0.57
CLIP1-213ENST00000540338 TOM1L1O75674 476 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 FAM153BP0C7A2 387 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 GPR162Q16538 588 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 FAM153CQ494X1 144 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 CCDC89Q8N998 374 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 SCFD2Q8WU76 684 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 RBM41Q96IZ5 413 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 WNK4Q96J92 1243 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 CABS1Q96KC9 395 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 MFSD14AQ96MC6 490 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 FAM153AQ9UHL3 310 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 LCMT1Q9UIC8 334 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 LRRD1A4D1F6 860 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 CXCL11O14625 94 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 HBP1O60381 514 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 HSD17B3P37058 310 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 NLRP11P59045 1033 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 PTENP60484 403 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 CLEC16AQ2KHT3 1053 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 C6orf118Q5T5N4 469 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 MMS22LQ6ZRQ5 1243 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 SPATS2Q86XZ4 545 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms