RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CNOT3O75175 753 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 CSDE1O75534 798 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 IDH1O75874 414 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 TNFAIP8O95379 198 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 PARNO95453 639 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 BAG2O95816 211 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 H2AFZP0C0S5 128 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 HSPA8P11142 646 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 KRT13P13646 458 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 UBA7P41226 1012 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 MSLNQ13421 630 aaPredicted RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 TCIRG1Q13488 830 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TGFBIQ15582 683 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 IL17AQ16552 155 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TMEM266Q2M3C6 531 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 PUS10Q3MIT2 529 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 DNAL1Q4LDG9 190 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 H2AFVQ71UI9 128 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 AHI1Q8N157 1196 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TTC39CQ8N584 583 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 GLG1Q92896 1179 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 FAM161BQ96MY7 647 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 ZNF696Q9H7X3 374 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 NAGPAQ9UK23 515 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 RTL9Q8NET4 1388 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TOPAZ1Q8N9V7 1692 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 SOBPA7XYQ1 873 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 FAM47E-STBD1D6RA91 191 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ZBED4O75132 1171 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 NOL4O94818 638 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ESRRBO95718 433 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TTC4O95801 387 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 OCM2P0CE71 109 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 OCMP0CE72 109 aaPredicted RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 ALAS1P13196 640 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 AMPD1P23109 780 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TKTP29401 623 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 SLC5A2P31639 672 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 PHKA2P46019 1235 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 WDR4P57081 412 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 RASGRF1Q13972 1273 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 STAT4Q14765 748 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ALKBH5Q6P6C2 394 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 C11orf74Q86VG3 221 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ZNF410Q86VK4 478 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TIAM2Q8IVF5 1701 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 SRRM1Q8IYB3 904 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP3-203ENST00000538686 CLIP3Q96DZ5 547 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 LSM14BQ9BX40 385 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 SEMA6BQ9H3T3 888 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ARL8BQ9NVJ2 186 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 GIN1Q9NXP7 522 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ZSWIM5Q9P217 1185 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ZMYM2Q9UBW7 1377 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 PRELID1Q9Y255 219 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 MTO1Q9Y2Z2 717 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP3-203ENST00000538686 PCDHB2Q9Y5E7 798 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 SNX9Q9Y5X1 595 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 PLEKHG3A1L390 1219 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 DENRO43583 198 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 TIMM44O43615 452 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 DMPKQ09013 629 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 STK4Q13043 487 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 USP41Q3LFD5 358 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ARL13BQ3SXY8 428 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 KYAT3Q6YP21 454 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 DTHD1Q6ZMT9 781 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 RIPOR1Q6ZS17 1223 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 WDR75Q8IWA0 830 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 ICA1LQ8NDH6 482 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 USP6NLQ92738 828 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 BORCS5Q969J3 196 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 EEF2KMTQ96G04 330 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 CDK5RAP3Q96JB5 506 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TTC1Q99614 292 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TRIM9Q9C026 710 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 SENP6Q9GZR1 1112 aaPredicted RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 CCDC68Q9H2F9 335 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 TYW1Q9NV66 732 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 RRN3Q9NYV6 651 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 WHRNQ9P202 907 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 RSL24D1Q9UHA3 163 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 HERC5Q9UII4 1024 aaKnown RBP13.16□□□□□ -0.3
USP3-203ENST00000538686 PCDHA3Q9Y5H8 950 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 SLC4A4Q9Y6R1 1079 aa13.16□□□□□ -0.3
USP3-203ENST00000538686 ATAD5Q96QE3 1844 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 LMO7Q8WWI1 1683 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 CFAP69A5D8W1 941 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 TM7SF2O76062 418 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 CIAO1O76071 339 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 PLCG2P16885 1265 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 CDH3P22223 829 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 TIMM10P62072 90 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 ASIC1P78348 528 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 CAV1Q03135 178 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 NONOQ15233 471 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP3-203ENST00000538686 MYLK3Q32MK0 819 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 METTL21CQ5VZV1 264 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms